View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3276_high_13 (Length: 329)
Name: NF3276_high_13
Description: NF3276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3276_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 121 - 309
Target Start/End: Complemental strand, 13520225 - 13520037
Alignment:
| Q |
121 |
gaagaagaaaggcagaagcatagagcaactcattcctattcattcatcattcaaaactccatattcaaccgaaatctaacaaattcttcaaatgaattcg |
220 |
Q |
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| T |
13520225 |
gaagaagaaaggcagaagcatagagcaactcattcctattcattcatcattcaaaaatccatattcaacccaaatctaacaaattcttcaaatgaattcg |
13520126 |
T |
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| Q |
221 |
aatctaacgaatatgaatccagattcaacccagtaaaacgaatacgaatctaacaaattattcaaacaaatctgaatcattcatcgtgt |
309 |
Q |
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| T |
13520125 |
aatctaacgaatatgaatccagattcaacccagtaaaacgaatacgaatctaacaaattattcaaacaaatctgaatcattcatggtgt |
13520037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 133 - 299
Target Start/End: Complemental strand, 4126070 - 4125917
Alignment:
| Q |
133 |
cagaagcatagagcaactcattcctattcattcatcattcaaaactccatattcaaccgaaatctaacaaattcttcaaatgaattcgaatctaacgaat |
232 |
Q |
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||||| |||||| |||||||||| |||||||||||||||||| | | ||||||||||| |||||||||||| ||||||||||||| |
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| T |
4126070 |
cagaaacatagaacaactcattcttattcattcatcattcaagaattcatattcaaccctgatctaacaaattt-------------gaatctaacgaat |
4125984 |
T |
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| Q |
233 |
atgaatccagattcaacccagtaaaacgaatacgaatctaacaaattattcaaacaaatctgaatca |
299 |
Q |
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| T |
4125983 |
atgaatccagattcaacccagtaaaacgaatacgaatccaacaaattcttcaaacgaatctgaatca |
4125917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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