View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3276_high_18 (Length: 293)
Name: NF3276_high_18
Description: NF3276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3276_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 20184300 - 20184034
Alignment:
| Q |
19 |
aatcaagtatgggcgtattgctcaggtccatcaatgcatcaaggtatagacaagagcgaacactctgctacccacacttatgatggtctacgtctggtac |
118 |
Q |
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| T |
20184300 |
aatcaagtatgggcgtattattcaggtccatcaatgcatcaaggtatagacaagagcgaacactctgccacccacacttatgatggtctccgtctggtac |
20184201 |
T |
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| Q |
119 |
ccatacttggaagaaacatataagatcccttgcttaccaaaatgccaagcctagtagtctgatccagctgagaaatgacactcctctaacacgcctagca |
218 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20184200 |
ccatacgtggaagaaacatataagatcccttgcttaccaaaatgccaagcctagtagtctgatccagctgagaaatgacactcctctaacacgcccagca |
20184101 |
T |
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| Q |
219 |
attgaaccagtggctcttgctcccaaccaaacatgttccttccacctcgtatctcacaccaatctgt |
285 |
Q |
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||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20184100 |
attaaactagtggctcttgctcccaaccaaacatgttccttccacctcgtatctcacaccaatctgt |
20184034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 44271651 - 44271385
Alignment:
| Q |
19 |
aatcaagtatgggcgtattgctcaggtccatcaatgcatcaaggtatagacaagagcgaacactctgctacccacacttatgatggtctacgtctggtac |
118 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
44271651 |
aatcaagtatgggcgtattattcaggtccatcaatgcatcaaggtatagacaagagcgaacactctgccacccacacttatgatggtctccgtctggtac |
44271552 |
T |
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| Q |
119 |
ccatacttggaagaaacatataagatcccttgcttaccaaaatgccaagcctagtagtctgatccagctgagaaatgacactcctctaacacgcctagca |
218 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44271551 |
ccatacgtggaagaaacatataagatcccttgcttaccaaaatgccaagcctagtagtctgatccagctgagaaatgacactcctctaacacgcccagca |
44271452 |
T |
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| Q |
219 |
attgaaccagtggctcttgctcccaaccaaacatgttccttccacctcgtatctcacaccaatctgt |
285 |
Q |
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||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44271451 |
attaaactagtggctcttgctcccaaccaaacatgttccttccacctcgtatctcacaccaatctgt |
44271385 |
T |
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