View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3276_high_19 (Length: 291)
Name: NF3276_high_19
Description: NF3276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3276_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 11845409 - 11845681
Alignment:
| Q |
1 |
aagctactcaccttaccacagtagttcaaggtacttttggttacttagaccctgagtactttcatacaagtcaatttaccgagaaaagtgatgtatttag |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11845409 |
aagctactcaccttaccacggtagttcaaggtacttttggttacttagaccctgagtactttcatacaagtcaatttaccgagaaaagtgatgtatttag |
11845508 |
T |
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| Q |
101 |
cttcggagtagttcttgctgaacttttaaccggtaagaagccggtatcctctataggatctggcgaataccaaagtttagcttcctattttattgagtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11845509 |
cttcggagtagttcttgctgaacttttaaccggtaagaagccggtatcctctataggatctggcgaataccaaagtttagcttcctattttattgagtgt |
11845608 |
T |
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| Q |
201 |
atagatgagaatatgttgtttgacattattgacaaaagggtcacaaaagaaggggagaaagaacatgtcgttg |
273 |
Q |
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| T |
11845609 |
atagatgagaatatgttgtttgacattattgacaaaagggtcacaaaagaaggggagaaagaacatgtcgttg |
11845681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 11850138 - 11850410
Alignment:
| Q |
1 |
aagctactcaccttaccacagtagttcaaggtacttttggttacttagaccctgagtactttcatacaagtcaatttaccgagaaaagtgatgtatttag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || |
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| T |
11850138 |
aagctactcaccttaccacagtagttcaaggtacttttggttacttagaccctgagtactttcatacaagtcaatttactgagaaaagtgatgtgtacag |
11850237 |
T |
|
| Q |
101 |
cttcggagtagttcttgctgaacttttaaccggtaagaagccggtatcctctataggatctggcgaataccaaagtttagcttcctattttattgagtgt |
200 |
Q |
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| T |
11850238 |
cttcggagttgttcttgctgaacttttaacgggtaagaagccaatatctgcaataggatctggggaataccaaaatttagcttcctattttattcagtgt |
11850337 |
T |
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| Q |
201 |
atagatgagaatatgttgtttgacattattgacaaaagggtcacaaaagaaggggagaaagaacatgtcgttg |
273 |
Q |
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| T |
11850338 |
atagaggaggatatgttgtttgatattattgacaaaagggttacgaaagaaggggagaaagaacatgtcgttg |
11850410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 9118765 - 9118846
Alignment:
| Q |
37 |
ttggttacttagaccctgagtactttcatacaagtcaatttaccgagaaaagtgatgtatttagcttcggagtagttcttgc |
118 |
Q |
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|||| ||||||||||| |||||| | || || |||||| ||||||||||||||||| | |||||| |||||||||||||| |
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| T |
9118765 |
ttggatacttagacccagagtacatgcaaacgcatcaattaaccgagaaaagtgatgtttatagctttggagtagttcttgc |
9118846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 1815836 - 1815785
Alignment:
| Q |
66 |
acaagtcaatttaccgagaaaagtgatgtatttagcttcggagtagttcttg |
117 |
Q |
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||||| ||||| || |||||||||||||||| |||||| ||||||||||||| |
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| T |
1815836 |
acaagccaattaactgagaaaagtgatgtatatagctttggagtagttcttg |
1815785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 1843158 - 1843248
Alignment:
| Q |
27 |
caaggtacttttggttacttagaccctgagtactttcatacaagtcaatttaccgagaaaagtgatgtatttagcttcggagtagttcttg |
117 |
Q |
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||||| ||| |||| |||||||| || ||||| | || ||||||||||| || || ||||||||||| | |||||| ||||||||||||| |
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| T |
1843158 |
caaggaactattggctacttagatccagagtatatgcaaacaagtcaattaactgaaaaaagtgatgtctatagctttggagtagttcttg |
1843248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 1857169 - 1857259
Alignment:
| Q |
27 |
caaggtacttttggttacttagaccctgagtactttcatacaagtcaatttaccgagaaaagtgatgtatttagcttcggagtagttcttg |
117 |
Q |
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||||| ||| |||| |||||||| || ||||| | || ||||||||||| || || ||||||||||| | |||||| ||||||||||||| |
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| T |
1857169 |
caaggaactattggctacttagatccagagtatatgcaaacaagtcaattaactgaaaaaagtgatgtctatagctttggagtagttcttg |
1857259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 1868767 - 1868857
Alignment:
| Q |
27 |
caaggtacttttggttacttagaccctgagtactttcatacaagtcaatttaccgagaaaagtgatgtatttagcttcggagtagttcttg |
117 |
Q |
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||||| ||| |||| |||||||| || ||||| | || ||||||||||| || || ||||||||||| | |||||| ||||||||||||| |
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| T |
1868767 |
caaggaactattggctacttagatccagagtatatgcaaacaagtcaattaactgaaaaaagtgatgtctatagctttggagtagttcttg |
1868857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 30116312 - 30116418
Alignment:
| Q |
29 |
aggtacttttggttacttagaccctgagtactttcatacaagtcaatttaccgagaaaagtgatgtatttagcttcggagtagttcttgctgaactttta |
128 |
Q |
| |
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|||||||||||| ||| | || ||||| || ||||| ||||||||||||| || || |||||||||| ||| ||||| || || |||| ||| ||| || |
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| T |
30116312 |
aggtacttttgggtacatggatcctgaatattttcagtcaagtcaatttacagataagagtgatgtatatagtttcggcgtggtgcttgttgagcttata |
30116411 |
T |
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| Q |
129 |
accggta |
135 |
Q |
| |
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||||||| |
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| T |
30116412 |
accggta |
30116418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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