View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3276_high_21 (Length: 269)

Name: NF3276_high_21
Description: NF3276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3276_high_21
NF3276_high_21
[»] chr1 (2 HSPs)
chr1 (1-254)||(42099850-42100104)
chr1 (215-260)||(52036164-52036209)
[»] chr3 (6 HSPs)
chr3 (216-260)||(43721100-43721144)
chr3 (219-260)||(8627846-8627887)
chr3 (220-259)||(46807962-46808001)
chr3 (216-260)||(38341259-38341303)
chr3 (216-256)||(50716927-50716967)
chr3 (216-256)||(50795880-50795920)
[»] chr8 (3 HSPs)
chr8 (216-260)||(34664585-34664629)
chr8 (216-260)||(40525027-40525071)
chr8 (216-260)||(5338483-5338527)
[»] chr7 (3 HSPs)
chr7 (216-260)||(46273046-46273090)
chr7 (216-260)||(30714161-30714205)
chr7 (217-259)||(39972238-39972280)
[»] chr5 (4 HSPs)
chr5 (219-260)||(36339475-36339516)
chr5 (219-260)||(18342130-18342171)
chr5 (215-256)||(37883124-37883165)
chr5 (220-260)||(38363685-38363725)
[»] chr6 (1 HSPs)
chr6 (216-258)||(7423584-7423626)
[»] chr4 (1 HSPs)
chr4 (216-256)||(53893461-53893501)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 42100104 - 42099850
Alignment:
Q  1 ttcgccgtagatttgggtcaaaattgttgtttcaggatcgtaaatcttgaatattattgtgtgaagttaattagaagcatctacaaagataagtagaacc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||    
T  42100104 ttcgccgtagatttgggtcaaaattgttgtttcaggatcgtaaatcttgaatataattgtgtgaagttaattagaagcatctacgaagataaatagaacc 42100005  T
Q  101 aacacatttgggggaaaatggtgaattgtataaagaaaatgtaggttcgttttagaatattttg-nnnnnnnnactaaatgatagaataaattggccact 199  Q
    ||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||         |||||||||| |||||| |||||||||    
T  42100004 aacacatttgggggaaaatggtgaactgtataaagaaaaactaggttcgttttagaatattttgtttaagtttactaaatgatggaataatttggccact 42099905  T
Q  200 catttatttatccaatgactattactttttccactctatggccttctcgcacgcc 254  Q
    |||||||||||| |||||||||||||||| |||| | ||| ||||||||||||||    
T  42099904 catttatttatctaatgactattacttttcccacccgatgaccttctcgcacgcc 42099850  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 52036164 - 52036209
Alignment:
Q  215 tgactattactttttccactctatggccttctcgcacgccctatgc 260  Q
    |||||||||||||| ||| | |||||||||||||||||| ||||||    
T  52036164 tgactattacttttcccattttatggccttctcgcacgctctatgc 52036209  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 43721100 - 43721144
Alignment:
Q  216 gactattactttttccactctatggccttctcgcacgccctatgc 260  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  43721100 gactattactttttccaccctatggccttctcgcacgccctatgc 43721144  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 8627887 - 8627846
Alignment:
Q  219 tattactttttccactctatggccttctcgcacgccctatgc 260  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  8627887 tattactttttccaccctatggccttctcgcacgccctatgc 8627846  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 46807962 - 46808001
Alignment:
Q  220 attactttttccactctatggccttctcgcacgccctatg 259  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  46807962 attacttttcccaccctatggccttctcgcacgccctatg 46808001  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 38341259 - 38341303
Alignment:
Q  216 gactattactttttccactctatggccttctcgcacgccctatgc 260  Q
    ||||||||||||| |||| | ||| ||||||||||||||||||||    
T  38341259 gactattacttttcccaccccatgaccttctcgcacgccctatgc 38341303  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 50716967 - 50716927
Alignment:
Q  216 gactattactttttccactctatggccttctcgcacgccct 256  Q
    |||||||||||||||||| ||||||||||||| | ||||||    
T  50716967 gactattactttttccaccctatggccttctcccgcgccct 50716927  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 50795880 - 50795920
Alignment:
Q  216 gactattactttttccactctatggccttctcgcacgccct 256  Q
    |||||||||||||||||| ||||||||||||| | ||||||    
T  50795880 gactattactttttccaccctatggccttctcccgcgccct 50795920  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 34664629 - 34664585
Alignment:
Q  216 gactattactttttccactctatggccttctcgcacgccctatgc 260  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||    
T  34664629 gactattacttttaccaccctatggccttctcgcacgccctatgc 34664585  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 40525071 - 40525027
Alignment:
Q  216 gactattactttttccactctatggccttctcgcacgccctatgc 260  Q
    |||||||| |||| |||| ||||||||||||||||||||||||||    
T  40525071 gactattatttttcccaccctatggccttctcgcacgccctatgc 40525027  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 5338483 - 5338527
Alignment:
Q  216 gactattactttttccactctatggccttctcgcacgccctatgc 260  Q
    |||||||| |||| |||  ||||||||||||||||||||||||||    
T  5338483 gactattaattttcccatcctatggccttctcgcacgccctatgc 5338527  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 46273090 - 46273046
Alignment:
Q  216 gactattactttttccactctatggccttctcgcacgccctatgc 260  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||    
T  46273090 gactattacttttcccaccctatggccttctcgcacgccctatgc 46273046  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 30714205 - 30714161
Alignment:
Q  216 gactattactttttccactctatggccttctcgcacgccctatgc 260  Q
    ||||||||||||| |||| ||||||||||||| ||||||||||||    
T  30714205 gactattacttttaccaccctatggccttctcacacgccctatgc 30714161  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 39972238 - 39972280
Alignment:
Q  217 actattactttttccactctatggccttctcgcacgccctatg 259  Q
    ||||||||||||||| | |||||||||||| ||||||||||||    
T  39972238 actattactttttcctccctatggccttctagcacgccctatg 39972280  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 36339475 - 36339516
Alignment:
Q  219 tattactttttccactctatggccttctcgcacgccctatgc 260  Q
    ||||||||||||||| ||||||||||||||| ||||||||||    
T  36339475 tattactttttccaccctatggccttctcgcgcgccctatgc 36339516  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 18342171 - 18342130
Alignment:
Q  219 tattactttttccactctatggccttctcgcacgccctatgc 260  Q
    |||||||||| |||| ||||||||||||||| ||||||||||    
T  18342171 tattacttttcccaccctatggccttctcgcgcgccctatgc 18342130  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 37883124 - 37883165
Alignment:
Q  215 tgactattactttttccactctatggccttctcgcacgccct 256  Q
    ||||||||||||||||||| |||| |||||||||| ||||||    
T  37883124 tgactattactttttccaccctattgccttctcgcgcgccct 37883165  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 38363685 - 38363725
Alignment:
Q  220 attactttttccactctatggccttctcgcacgccctatgc 260  Q
    ||||||||||||||  |||| ||||||||||||||||||||    
T  38363685 attactttttccaccatatgaccttctcgcacgccctatgc 38363725  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 7423626 - 7423584
Alignment:
Q  216 gactattactttttccactctatggccttctcgcacgccctat 258  Q
    ||||||||||||||||||||||||| |||||| | ||||||||    
T  7423626 gactattactttttccactctatggtcttctcccgcgccctat 7423584  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 53893461 - 53893501
Alignment:
Q  216 gactattactttttccactctatggccttctcgcacgccct 256  Q
    ||||||||||||| |||| ||||||||||||| ||||||||    
T  53893461 gactattacttttcccaccctatggccttctcccacgccct 53893501  T

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