View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3276_high_24 (Length: 238)

Name: NF3276_high_24
Description: NF3276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3276_high_24
NF3276_high_24
[»] chr1 (22 HSPs)
chr1 (1-221)||(12318718-12318937)
chr1 (3-155)||(41135598-41135749)
chr1 (3-174)||(37168055-37168227)
chr1 (3-174)||(47114930-47115101)
chr1 (3-161)||(7482470-7482627)
chr1 (8-89)||(34602583-34602664)
chr1 (8-89)||(34603419-34603500)
chr1 (3-174)||(11348456-11348628)
chr1 (23-114)||(22079140-22079231)
chr1 (3-174)||(29136006-29136177)
chr1 (8-174)||(28242147-28242313)
chr1 (8-174)||(37033316-37033483)
chr1 (3-89)||(193454-193541)
chr1 (3-89)||(31925944-31926031)
chr1 (3-116)||(37879149-37879264)
chr1 (16-154)||(9109653-9109791)
chr1 (3-89)||(13547327-13547414)
chr1 (3-89)||(13549238-13549325)
chr1 (3-174)||(42298213-42298385)
chr1 (3-146)||(19752472-19752615)
chr1 (3-148)||(19754276-19754424)
chr1 (3-116)||(47255578-47255692)
[»] chr5 (13 HSPs)
chr5 (23-174)||(33906288-33906438)
chr5 (3-174)||(316524-316692)
chr5 (3-174)||(27015290-27015462)
chr5 (3-174)||(40147019-40147191)
chr5 (3-174)||(14689649-14689817)
chr5 (18-174)||(213227-213384)
chr5 (3-174)||(4160392-4160562)
chr5 (3-83)||(38746854-38746935)
chr5 (24-174)||(35615930-35616079)
chr5 (3-84)||(5057895-5057977)
chr5 (101-174)||(10055044-10055116)
chr5 (3-80)||(16641179-16641256)
chr5 (185-225)||(13239530-13239570)
[»] chr3 (21 HSPs)
chr3 (8-135)||(34795666-34795793)
chr3 (3-174)||(47304010-47304181)
chr3 (8-159)||(20937431-20937581)
chr3 (3-174)||(46860229-46860402)
chr3 (2-88)||(1683332-1683418)
chr3 (3-148)||(6095837-6095982)
chr3 (33-157)||(35138975-35139098)
chr3 (3-174)||(34490971-34491143)
chr3 (3-174)||(40913096-40913269)
chr3 (72-170)||(26323821-26323918)
chr3 (3-148)||(49199708-49199854)
chr3 (3-174)||(54593463-54593634)
chr3 (8-116)||(4569766-4569876)
chr3 (8-74)||(26323319-26323385)
chr3 (8-174)||(43403976-43404143)
chr3 (3-174)||(5434116-5434288)
chr3 (2-109)||(36018673-36018782)
chr3 (8-174)||(43402033-43402200)
chr3 (8-89)||(55302208-55302290)
chr3 (3-84)||(30235973-30236055)
chr3 (8-174)||(41819767-41819931)
[»] chr8 (10 HSPs)
chr8 (3-108)||(40585549-40585654)
chr8 (3-174)||(40221503-40221675)
chr8 (8-174)||(42435234-42435401)
chr8 (3-89)||(11383829-11383916)
chr8 (8-109)||(33655548-33655649)
chr8 (3-89)||(4283367-4283454)
chr8 (3-174)||(40328537-40328709)
chr8 (3-84)||(44353640-44353722)
chr8 (4-135)||(3846059-3846190)
chr8 (4-155)||(10239938-10240086)
[»] chr4 (26 HSPs)
chr4 (3-174)||(3785849-3786019)
chr4 (3-174)||(22882992-22883162)
chr4 (3-174)||(22934656-22934826)
chr4 (8-157)||(35370581-35370729)
chr4 (8-161)||(41961179-41961335)
chr4 (8-174)||(35662200-35662365)
chr4 (8-174)||(33989621-33989786)
chr4 (2-157)||(35369678-35369831)
chr4 (3-148)||(50674084-50674229)
chr4 (2-174)||(55085601-55085775)
chr4 (8-84)||(379227-379303)
chr4 (2-89)||(41964258-41964346)
chr4 (3-170)||(46703263-46703429)
chr4 (8-148)||(34112396-34112536)
chr4 (27-174)||(8665165-8665313)
chr4 (3-174)||(50262936-50263108)
chr4 (8-174)||(6655714-6655881)
chr4 (8-116)||(26364080-26364190)
chr4 (23-116)||(22629148-22629241)
chr4 (3-148)||(54882805-54882950)
chr4 (3-174)||(8647896-8648068)
chr4 (3-89)||(12073235-12073322)
chr4 (3-76)||(27417199-27417273)
chr4 (8-66)||(33089754-33089812)
chr4 (40-148)||(40630769-40630876)
chr4 (40-135)||(25723493-25723588)
[»] scaffold0002 (1 HSPs)
scaffold0002 (64-174)||(490745-490854)
[»] chr7 (17 HSPs)
chr7 (3-174)||(4512628-4512799)
chr7 (3-174)||(34310954-34311126)
chr7 (8-174)||(4510791-4510957)
chr7 (3-116)||(29608551-29608666)
chr7 (8-174)||(6431729-6431896)
chr7 (8-174)||(4508949-4509115)
chr7 (3-175)||(48599572-48599745)
chr7 (8-148)||(2361214-2361354)
chr7 (3-89)||(2390125-2390212)
chr7 (2-161)||(3258767-3258926)
chr7 (3-84)||(6360150-6360232)
chr7 (3-108)||(1360393-1360497)
chr7 (3-174)||(22328637-22328809)
chr7 (14-155)||(8359567-8359708)
chr7 (3-174)||(22269733-22269903)
chr7 (27-174)||(5116393-5116540)
chr7 (17-117)||(43363667-43363767)
[»] chr2 (9 HSPs)
chr2 (64-174)||(42261910-42262019)
chr2 (8-174)||(42288353-42288519)
chr2 (3-148)||(35447122-35447267)
chr2 (3-174)||(1631970-1632142)
chr2 (3-174)||(45726688-45726859)
chr2 (63-163)||(30218333-30218432)
chr2 (2-84)||(17450439-17450522)
chr2 (14-97)||(43730983-43731066)
chr2 (133-174)||(24197657-24197698)
[»] scaffold0466 (1 HSPs)
scaffold0466 (3-174)||(7086-7258)
[»] chr6 (11 HSPs)
chr6 (3-174)||(603318-603490)
chr6 (3-174)||(5043386-5043557)
chr6 (8-174)||(2973182-2973349)
chr6 (3-174)||(17762745-17762919)
chr6 (3-174)||(21593424-21593594)
chr6 (2-116)||(3808945-3809061)
chr6 (3-84)||(26830362-26830444)
chr6 (40-133)||(25072983-25073076)
chr6 (63-148)||(17757867-17757953)
chr6 (2-88)||(22425064-22425149)
chr6 (185-225)||(33160704-33160744)
[»] scaffold0197 (1 HSPs)
scaffold0197 (29-174)||(1671-1815)
[»] scaffold0014 (1 HSPs)
scaffold0014 (3-148)||(80521-80666)
[»] scaffold0176 (1 HSPs)
scaffold0176 (2-148)||(18238-18384)
[»] scaffold0286 (1 HSPs)
scaffold0286 (8-174)||(11316-11483)


Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 12318718 - 12318937
Alignment:
Q  1 cacccccaaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaaactctcctttg 100  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  12318718 cacccccaaagagaaccaacccttagcctttgatttccaaaagattttctattttggtctcccaagactcacccaagttgctcataaaaactctcctttg 12318817  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccctctcccaagagccctctcatttggttcagattctatcaaattgtgtcacgatt 200  Q
    ||||||||||||| |||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12318818 atgtgtttctcaatcctatgaacttctcccc-aaaaggcaccaaccctctcccaagagccctctcatttggttcagattctatcaaattgtgtcatgatt 12318916  T
Q  201 tgcaccaatcgtgtcacgatt 221  Q
    |||||||||||||||| ||||    
T  12318917 tgcaccaatcgtgtcatgatt 12318937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 155
Target Start/End: Complemental strand, 41135749 - 41135598
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaaactctcctttgat 102  Q
    |||| |||||||||||| | ||||||||| ||||||||| |||||||| ||||||  | | |||||||||||||||| |||| ||| |||||||||||||    
T  41135749 ccccaaaagagaaccaatccttagcctttaatttccaaatgatcttctcttttggtttcctaagactcacccaagtttctcacaaagactctcctttgat 41135650  T
Q  103 gtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccctctcccaa 155  Q
    ||||||| |||||| | ||| |||| ||| |||||||||||||||||||||||    
T  41135649 gtgtttcccaaccccatgaatctct-ccctaaaaggcaccaaccctctcccaa 41135598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 37168227 - 37168055
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttg 100  Q
    |||| |||||||| ||||| ||||||||||||||| | ||||||||||| |||| |  |  |||||||||||||||||||||| |||| |||||||  |     
T  37168227 ccccaaaagagaatcaacctttagcctttgatttcactaaggatcttctcttttagtttcacaagactcacccaagttgctcacaaaagactctccactc 37168128  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttggttc 174  Q
    ||||||||| |||||| | |||  ||| ||| ||||||||||||||| | |||||||||||| ||| ||||||||    
T  37168127 atgtgtttcccaaccccatgaa--tcttccccaaaaggcaccaacccttttcccaagagccccctcttttggttc 37168055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 47115101 - 47114930
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttg 100  Q
    |||| |||||||||||||| |||||||||||||||   ||||||||||| ||||||  |  |||||||||||||||||||||| |||| ||||||| ||     
T  47115101 ccccaaaagagaaccaacccttagcctttgatttcattaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccattc 47115002  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccct-ctcccaagagccctctcatttggttc 174  Q
    ||||||||| |||||| | ||| || ||||  |||||| |||||||||  |||||||||||| ||| ||||||||    
T  47115001 atgtgtttcccaaccccatgaatct-tccc--aaaaggtaccaaccctgttcccaagagccccctcttttggttc 47114930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 7482470 - 7482627
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttga 101  Q
    |||| |||||||||||||| ||||| |||||||||| ||||||||||| |||| |  |  |||||||||||||||||||||| |||| |||||||  | |    
T  7482470 ccccaaaagagaaccaacccttagc-tttgatttcctaaggatcttctctttttgtttcacaagactcacccaagttgctcacaaaagactctccactca 7482568  T
Q  102 tgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccc 161  Q
    |||||||| |||||| | |||  ||| ||| ||||||||||||||| | ||||||||||||    
T  7482569 tgtgtttcccaaccccatgaa--tcttccccaaaaggcaccaacccttttcccaagagccc 7482627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 34602583 - 34602664
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaa 89  Q
    |||||||||||||| |||||||||||||||| ||||||||||| ||||||  |  |||||||||||||||||||||| ||||    
T  34602583 aaagagaaccaacccttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaa 34602664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 34603500 - 34603419
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaa 89  Q
    |||||||||||||| |||||||||||||||| ||||||||||| ||||||  |  |||||||||||||||||||||| ||||    
T  34603500 aaagagaaccaacccttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaa 34603419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 11348628 - 11348456
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaa-aactctcctttg 100  Q
    |||| |||||||||||||| ||||||||||||||| | ||||||||||| ||||||  |  |||||||||||||||||||||| |||  |||||||  |     
T  11348628 ccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaatgactctccactc 11348529  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcacca-accctctcccaagagccctctcatttggttc 174  Q
    ||||||||  |||||| | |||  ||| | | ||||||||||| ||| | |||||||||||| ||| ||||||||    
T  11348528 atgtgttttccaaccccatgaa--tcttctccaaaaggcaccagaccttttcccaagagccccctcttttggttc 11348456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 22079231 - 22079140
Alignment:
Q  23 ttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaaactctcctttgatgtgtttctcaac 114  Q
    |||||||||||||||  ||| ||||| ||||||||  | |||||||||||| |||||||||| ||| ||||||| |||||||||||| ||||    
T  22079231 ttagcctttgatttcataagcatcttatattttggtttgccaagactcacctaagttgctcacaaagactctcccttgatgtgtttcccaac 22079140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 29136177 - 29136006
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctca-taaaaactctcctttg 100  Q
    |||| ||||||||| |||| ||||||||||||||| | ||||||||||| ||||||  |  ||||||||||||||||||||||  |||||||||||  |     
T  29136177 ccccaaaagagaactaacccttagcctttgatttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaaaactctccactc 29136078  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttggttc 174  Q
    |||| |||| |||||| | |||  ||| ||| ||||||||||||||| | ||||||||| || ||| ||||||||    
T  29136077 atgtttttc-caaccccatgaa--tcttccccaaaaggcaccaacccttttcccaagagtcccctcttttggttc 29136006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 28242313 - 28242147
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaa-aactctcctttgatgtg 105  Q
    ||||||||||||||  |||||||||||||| | |||||| |||| ||||||  |  |||||||||||||||||||||| |||  |||||||  | |||||    
T  28242313 aaagagaaccaacccatagcctttgatttcactaaggatattctcttttggtttcacaagactcacccaagttgctcacaaatgactctccactcatgtg 28242214  T
Q  106 tttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttggttc 174  Q
    |||| ||||| || ||| || ||||  ||||||||||||||| | |||||||||||| ||| ||||||||    
T  28242213 tttcccaaccttatgaatct-tccc--aaaaggcaccaacccttttcccaagagccccctcttttggttc 28242147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 37033316 - 37033483
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaa-aactctcctttgatgtg 105  Q
    ||||||||||||||  |||||||||||||| | ||||||||||| ||||||  |  |||||||||||||||||||||| |||  |||||||  | |||||    
T  37033316 aaagagaaccaacccatagcctttgatttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaatgactctccactcatgtg 37033415  T
Q  106 tttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttggttc 174  Q
    |||| |||||  | |||  ||| ||  ||||||||||||||| | |||||||||||| ||| ||||||||    
T  37033416 tttcccaacctcatgaa--tcttcctcaaaaggcaccaacccttttcccaagagccccctcttttggttc 37033483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 193541 - 193454
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa 89  Q
    |||| |||||||||||||| ||||||||||||||| | ||||||||||| ||||||  |  ||||||||| |||||||||||| ||||    
T  193541 ccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacaagactcatccaagttgctcacaaaa 193454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 31925944 - 31926031
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa 89  Q
    |||| |||||||||||||| ||||||||||||||| | ||||||||||| ||||||  |  |||| ||||||||||||||||| ||||    
T  31925944 ccccaaaagagaaccaaccattagcctttgatttcactaaggatcttctcttttggtttcacaagtctcacccaagttgctcacaaaa 31926031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 37879149 - 37879264
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttg 100  Q
    |||| |||||||||||| | ||||||||||||||| | ||||||||||| |||||   |  |||||||||||||||||||||| |||| |||||||  |     
T  37879149 ccccaaaagagaaccaatccttagcctttgatttcactaaggatcttctcttttgatttcacaagactcacccaagttgctcacaaaagactctccactc 37879248  T
Q  101 atgtgtttctcaaccc 116  Q
    ||||||||| ||||||    
T  37879249 atgtgtttcccaaccc 37879264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 9109653 - 9109791
Alignment:
Q  16 ccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttgatgtgtttctcaac 114  Q
    |||||| |||| |||||||| ||  | ||||||||||||||   | |||||||||| |||| ||||||| |||| |||||| |||||||||| || ||||    
T  9109653 ccaaccattagtctttgattacctcatgatcttctattttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaac 9109752  T
Q  115 cctacgaacctctccccaaaaaggcaccaaccctctccca 154  Q
    |  | ||| |||||||| ||||| || |||||||||||||    
T  9109753 ctcatgaatctctcccc-aaaagacatcaaccctctccca 9109791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 13547327 - 13547414
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa 89  Q
    |||| |||||||||||||| ||||||||||||||| | ||| ||||||| ||||||  |  ||||| |||||||||||||||| ||||    
T  13547327 ccccaaaagagaaccaacccttagcctttgatttcactaagtatcttctcttttggtttcacaagattcacccaagttgctcacaaaa 13547414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 13549238 - 13549325
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa 89  Q
    |||| |||||||||||||| ||||||||||||||| | ||| ||||||| ||||||  |  ||||| |||||||||||||||| ||||    
T  13549238 ccccaaaagagaaccaacccttagcctttgatttcactaagtatcttctcttttggtttcacaagattcacccaagttgctcacaaaa 13549325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 174
Target Start/End: Original strand, 42298213 - 42298385
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaa-aactctcctttg 100  Q
    |||| |||||||||||||  ||||||||||||||| |  |||||||||| ||||||  |  |||||||||||||||||||||  |||  |||||||  |     
T  42298213 ccccaaaagagaaccaactcttagcctttgatttcacttaggatcttctcttttggtttcacaagactcacccaagttgctcgcaaatgactctccactc 42298312  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttggttc 174  Q
    ||||||||| |||||| | |||  ||| | | ||||||||||||||| | || ||||||||| ||| ||||||||    
T  42298313 atgtgtttcccaaccccatgaa--tcttctccaaaaggcaccaacccttttcacaagagccccctcttttggttc 42298385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 19752615 - 19752472
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttg 100  Q
    |||| |||||||||||| | ||||||||||||||| | ||||||||||| ||||||  |  ||||||||| | |||||||||| |||| |||||||  |     
T  19752615 ccccaaaagagaaccaatcattagcctttgatttcactaaggatcttctcttttggtttcacaagactcatctaagttgctcacaaaatactctccactc 19752516  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaacc 146  Q
    ||||||||| |||| | | |||  ||| ||| ||||||||||||||    
T  19752515 atgtgtttcccaactcaatgaa--tcttccccaaaaggcaccaacc 19752472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 148
Target Start/End: Complemental strand, 19754424 - 19754276
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttcca----aaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcct 97  Q
    |||| |||||||||||||| ||| |||||||||||      |||||| |||| ||||||  |  |||||||||||||||||||||| |||| |||||||     
T  19754424 ccccaaaagagaaccaaccattatcctttgatttcacttataaggattttctcttttggtttcacaagactcacccaagttgctcacaaaagactctcca 19754325  T
Q  98 ttgatgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccct 148  Q
     | ||||||||| |||||| | |||  ||| ||| ||||||||||||||||    
T  19754324 ctcatgtgtttcccaaccccatgaa--tcttccccaaaaggcaccaaccct 19754276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 47255578 - 47255692
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttg 100  Q
    |||| |||||||||||||| |||| |||||||||| | ||||||||||| ||||||  |  ||||||||| | |||||||||| |||| |||||||  |     
T  47255578 ccccaaaagagaaccaacccttagtctttgatttcactaaggatcttctcttttggtttcacaagactca-ctaagttgctcacaaaagactctccaatc 47255676  T
Q  101 atgtgtttctcaaccc 116  Q
    ||||||||| ||||||    
T  47255677 atgtgtttcccaaccc 47255692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 23 - 174
Target Start/End: Original strand, 33906288 - 33906438
Alignment:
Q  23 ttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaaactctcctttgatgtgtttctcaaccctacgaa 122  Q
    |||||||||||||||| ||||||||||| ||||||  | |||||||||||||||||||||||  ||  |||||||||||||||||||||||||| | |||    
T  33906288 ttagcctttgatttcctaaggatcttctcttttggtttcccaagactcacccaagttgctcactaagtctctcctttgatgtgtttctcaaccccatgaa 33906387  T
Q  123 cctctccccaaaaaggcaccaaccctctcccaagagccctctcatttggttc 174  Q
     |||||||| ||||||||||||||||||||||||||||| ||  ||||||||    
T  33906388 tctctcccc-aaaaggcaccaaccctctcccaagagcccccttttttggttc 33906438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 316692 - 316524
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaaactctcctttgat 102  Q
    |||| |||||||||||||| |||||||||||||||| | |||| |||| |||||| || |||||| ||||| |||||||||| ||| |||||| ||||||    
T  316692 ccccaaaagagaaccaacccttagcctttgatttccta-ggattttctcttttggtctcccaagattcacc-aagttgctcacaaagactctcttttgat 316595  T
Q  103 gtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccctctcccaagagccctctcatttggttc 174  Q
    ||||||| ||||| || ||| |||||||| ||||||||||||||||||||||||||||| | | ||||||||    
T  316594 gtgtttcccaaccttatgaatctctcccc-aaaaggcaccaaccctctcccaagagcccccccttttggttc 316524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 27015462 - 27015290
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttg 100  Q
    |||| |||||||||||||| ||||||||||||||| | ||||||||||| ||||||  || |||||||||||||||||||||| |||| |||||||  |     
T  27015462 ccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggttttacaagactcacccaagttgctcacaaaagactctccactc 27015363  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttggttc 174  Q
    ||||||||| |||||| | ||   ||| ||| ||||||||||||||| | || ||||||||| ||| ||||||||    
T  27015362 atgtgtttcccaaccccatga--ttcttccccaaaaggcaccaacccttttcacaagagccccctcttttggttc 27015290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 40147191 - 40147019
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttg 100  Q
    |||| |||||||||||||| ||||||||||||||| | ||||||||||| ||||||  |  |||||||||||||||||||||| |||| |||||||  |     
T  40147191 ccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactc 40147092  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaacc-ctctcccaagagccctctcatttggttc 174  Q
    ||||||||| |||||| | |||  ||| ||| ||||||||||||||  | |||||||||||| ||| ||||||||    
T  40147091 atgtgtttcccaaccccatgaa--tcttccccaaaaggcaccaaccattttcccaagagccccctcttttggttc 40147019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 174
Target Start/End: Original strand, 14689649 - 14689817
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaaactctcctttgat 102  Q
    |||| ||||||||||||||  ||||||||||||| | ||||||||| | ||||||  | |||||||| | | |||||||||| ||| |||||||||| ||    
T  14689649 ccccaaaagagaaccaacccctagcctttgattttctaaggatcttttcttttggtgtcccaagacttatctaagttgctcacaaatactctccttttat 14689748  T
Q  103 gtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccctctcccaagagccctctcatttggttc 174  Q
    ||||||| ||  |  ||||| ||||||   |||||||||||||||| || ||||| |||  || ||||||||    
T  14689749 gtgtttcccattctcacgaatctctcc---aaaaggcaccaaccctttcacaagaaccccttcttttggttc 14689817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 213384 - 213227
Alignment:
Q  18 aaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttgatgtgtttctcaacc 115  Q
    |||| ||||||||||||||| | ||||||||||| ||||||  |  |||||||||||||||||||||| |||| |||||||  | ||||||||| |||||    
T  213384 aacccttagcctttgatttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaacc 213285  T
Q  116 ctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttggttc 174  Q
    | | |||  ||| | | ||||||||||||||| | |||||||||||| ||| ||||||||    
T  213284 ccatgaa--tcttctccaaaaggcaccaacccttttcccaagagccccctcttttggttc 213227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 4160562 - 4160392
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaa-aactctcctttga 101  Q
    |||| |||||||||||||| ||||||||| ||| || ||||||||||| ||||||  | |||||| |||||| ||||||||| |||  |||||||  | |    
T  4160562 ccccaaaagagaaccaacccttagcctttaattacctaaggatcttctcttttggtttcccaagattcaccctagttgctcacaaatgactctccactta 4160463  T
Q  102 tgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccctctcccaagagccctctcatttggttc 174  Q
     ||| ||| |||||||| ||| |||||||| ||||| |||  |||||||||||||||||| ||| ||| ||||    
T  4160462 cgtg-ttcccaaccctatgaatctctcccc-aaaagacacttaccctctcccaagagccccctcttttagttc 4160392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 38746935 - 38746854
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttcca-aaggatcttctattttggccttccaagactcacccaagttgctc 83  Q
    |||| |||||||||||||| ||||||||||||||| | ||||||||||| ||||||  |  |||||||||||||||||||||    
T  38746935 ccccaaaagagaaccaacccttagcctttgatttcaataaggatcttctcttttggtttcacaagactcacccaagttgctc 38746854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 174
Target Start/End: Complemental strand, 35616079 - 35615930
Alignment:
Q  24 tagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaaactctcctttgatgtgtttctcaaccctacgaac 123  Q
    ||||||||||||||   | |||||||  ||||||  | |||||||||||| |||||| | | ||| ||||| |||| |||||||||||||| | | |||     
T  35616079 tagcctttgatttcttgatgatcttcgcttttggtttcccaagactcaccaaagttgattacaaagactcttcttttatgtgtttctcaactccatgaat 35615980  T
Q  124 ctctccccaaaaaggcaccaaccctctcccaagagccctctcatttggttc 174  Q
    |||||||| |||||||| || |||| ||||||||| || ||| ||||||||    
T  35615979 ctctcccc-aaaaggcatcacccctttcccaagagtcccctcttttggttc 35615930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 5057977 - 5057895
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttga-tttccaaaggatcttctattttggccttccaagactcacccaagttgctca 84  Q
    |||| |||||||||||||| ||||||||||| ||| | ||||||||||| ||||||  |  |||||||| |||||||||||||    
T  5057977 ccccaaaagagaaccaacccttagcctttgattttactaaggatcttctcttttggtttcacaagactcgcccaagttgctca 5057895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 10055044 - 10055116
Alignment:
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccctctcccaagagccctctcatttggttc 174  Q
    ||||||||| ||||||   ||| ||||||||| || |||||||| ||| |||||||||||||||| ||||||||    
T  10055044 atgtgtttcccaaccccgtgaatctctccccataa-ggcaccaaacctttcccaagagccctctcttttggttc 10055116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 16641179 - 16641256
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttg 80  Q
    |||| |||||||||||||| ||||||||||||||   ||| ||||||| ||||||  |  ||||||||||| ||||||    
T  16641179 ccccaaaagagaaccaacctttagcctttgattttttaagtatcttctcttttggtttcacaagactcaccaaagttg 16641256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 13239570 - 13239530
Alignment:
Q  185 aaattgtgtcacgatttgcaccaatcgtgtcacgattgatg 225  Q
    ||||||||||||| ||| || ||||||||||||||||||||    
T  13239570 aaattgtgtcacgttttccatcaatcgtgtcacgattgatg 13239530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 34795793 - 34795666
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaaactctcctttgatgtgtt 107  Q
    ||||||||||| || |||||||||||||| | ||||||||||| |||||| || |||||||||||||||||| || | |||||||||||||||||||||     
T  34795793 aaagagaaccatcccttagcctttgattttctaaggatcttctcttttggtctcccaagactcacccaagtttcttacaaaaactctcctttgatgtgta 34795694  T
Q  108 tctcaaccctacgaacctctccccaaaa 135  Q
    || |||||| | ||| |||||| |||||    
T  34795693 tcccaaccccatgaatctctcctcaaaa 34795666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 47304181 - 47304010
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaaactctcctttga 101  Q
    |||| |||||||||||||| ||||  ||||||||| | |||||| |||| ||||||  || ||||||||||| |||||||||| |||||||||||  | |    
T  47304181 ccccaaaagagaaccaacccttagtttttgatttcactaaggatattctcttttggttttacaagactcacctaagttgctcacaaaaactctccactca 47304082  T
Q  102 tgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttggttc 174  Q
    |||||||| |||||| | |||  ||| ||| ||||||||||||||| | |||||||||||| ||| ||||||||    
T  47304081 tgtgtttcccaaccccatgaa--tcttccccaaaaggcaccaacccttttcccaagagccccctcttttggttc 47304010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 20937581 - 20937431
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaaactctcctttgatgtgtt 107  Q
    |||||||||||||| ||| |||||||||||| ||| ||||||| |||||| || |||||| |||||||||||  ||| ||| |||| | |||||||||||    
T  20937581 aaagagaaccaacctttatcctttgatttcctaagaatcttctcttttggtctcccaagaatcacccaagtttgtcacaaagactcccttttgatgtgtt 20937482  T
Q  108 tctcaaccctacgaacctctccccaaaaaggcaccaaccctctcccaagagc 159  Q
    | ||||||  | ||| |||||| | |||||||||||||| | ||| ||||||    
T  20937481 tttcaaccacatgaatctctcctc-aaaaggcaccaaccttttcctaagagc 20937431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 46860402 - 46860229
Alignment:
Q  3 cccccaaagagaaccaaccgt--tagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaa-aactctccttt 99  Q
    |||| |||||||||||||| |  ||| ||||||||||| ||||||||||| ||||||  |  |||||||||||||||||||||| |||  |||||||  |    
T  46860402 ccccaaaagagaaccaaccctcttagtctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaatgactctccact 46860303  T
Q  100 gatgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttggttc 174  Q
     ||||||||| || ||||| |||  ||| ||| ||||||||||||||| | |||||||||||| ||| ||||||||    
T  46860302 catgtgtttcccatccctatgaa--tcttccccaaaaggcaccaacccttttcccaagagccccctcttttggttc 46860229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 1683418 - 1683332
Alignment:
Q  2 acccccaaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaa 88  Q
    ||||| ||||| |||||||| |||||||||||||| | ||||||||||| |||||| ||  ||||||||||| ||||||||||||||    
T  1683418 accccaaaagataaccaacccttagcctttgattttctaaggatcttctcttttggtctcacaagactcaccaaagttgctcataaa 1683332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 148
Target Start/End: Original strand, 6095837 - 6095982
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaa-aactctcctttg 100  Q
    |||| |||||||||||||| ||||| ||||||||| | ||||||||||| ||||||  |  |||||||||||||||||||||| |||  |||||||  |     
T  6095837 ccccaaaagagaaccaacctttagcatttgatttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaatgactctccactc 6095936  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccct 148  Q
    ||||||||| |||||| | |||  ||| ||| ||||||||||||||||    
T  6095937 atgtgtttcccaaccccatgaa--tcttccccaaaaggcaccaaccct 6095982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 157
Target Start/End: Original strand, 35138975 - 35139098
Alignment:
Q  33 atttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaaactctcctttgatgtgtttctcaaccctacgaacctctcccca 132  Q
    |||||| |||||||||||||||||| || ||||||||||  ||||||||||||||| |||||| |||||| |||||  |||||  | ||| |||||| |     
T  35138975 atttcctaaggatcttctattttggtctcccaagactcattcaagttgctcataaagactctcatttgatttgttttccaacctcatgaatctctcctc- 35139073  T
Q  133 aaaaggcaccaaccctctcccaaga 157  Q
    |||||||| ||||||| ||| ||||    
T  35139074 aaaaggcatcaaccctttccgaaga 35139098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 34491143 - 34490971
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaa-aactctcctttg 100  Q
    |||| |||||||||||||| ||||||||||||||| | ||||||||||| ||||||  |  |||||||||||||||||||||| |||  |||||||  |     
T  34491143 ccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaatgactctccactc 34491044  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttggttc 174  Q
    |||||||| ||||| | | |||  ||| | | ||||||||||||||| | || ||||||||| ||| ||||||||    
T  34491043 atgtgtttttcaactccatgaa--tcttctccaaaaggcaccaacccttttcacaagagccccctcttttggttc 34490971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 40913269 - 40913096
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttc-caagactcacccaagttgctcataaaa-actctccttt 99  Q
    |||| |||||||||||||| ||| ||||| ||||| | ||||||||||| ||||| | ||| |||||||||||||| ||||||| |||  |||||||  |    
T  40913269 ccccaaaagagaaccaacccttaacctttaatttcactaaggatcttctcttttg-ctttcacaagactcacccaatttgctcacaaatgactctccact 40913171  T
Q  100 gatgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttggttc 174  Q
     ||||||||| |||||| | ||| || || |||||||||||||||||| | |||||||||||| ||| ||||||||    
T  40913170 catgtgtttcccaaccccatgaatct-tctccaaaaaggcaccaacccttttcccaagagccccctcttttggttc 40913096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 170
Target Start/End: Original strand, 26323821 - 26323918
Alignment:
Q  72 cccaagttgctcataaaaactctcctttgatgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccctctcccaagagccctctcatttg 170  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||| | ||| ||||  |  |||| ||||||||||| |||||| ||||||||| ||||    
T  26323821 cccaagttgctcacaaagactctcctttgatgtgtttctcaaccccatgaatctct-gctgaaaatgcaccaaccctttcccaatagccctctcttttg 26323918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 148
Target Start/End: Original strand, 49199708 - 49199854
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactc-acccaagttgctcataaaa-actctccttt 99  Q
    |||| |||||||||||||| ||||||||||||||| | ||||||||||| ||||||  |  |||||||| |||||||||||||| |||| |||||||  |    
T  49199708 ccccaaaagagaaccaaccattagcctttgatttcactaaggatcttctcttttggtttcacaagactcaacccaagttgctcacaaaagactctccact 49199807  T
Q  100 gatgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccct 148  Q
     || |||||| |||||| | |||  ||| ||| ||||||||||||||||    
T  49199808 catatgtttcccaaccccatgaa--tcttccccaaaaggcaccaaccct 49199854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 54593634 - 54593463
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttg 100  Q
    |||| ||||||||| |||| ||||||||||||||| | ||||||||||||||||||  |  |||||||||| ||||||||||| |||| |||||||  |     
T  54593634 ccccaaaagagaac-aacccttagcctttgatttcactaaggatcttctattttggtttcacaagactcactcaagttgctcacaaaagactctccactc 54593536  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttggttc 174  Q
    ||||||||  || ||| | |||  ||| ||| |||||| |||||||| | |||||||||||| ||| ||||||||    
T  54593535 atgtgttttccatccccatgaa--tcttccccaaaaggtaccaacccttttcccaagagccccctcttttggttc 54593463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 4569876 - 4569766
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttgatgtg 105  Q
    |||||||||||||| ||||||||||||||| | || |||| ||| ||||||  |  |||||||||||||||||||||| |||| |||||||  | |||||    
T  4569876 aaagagaaccaacccttagcctttgatttcactaaagatcatctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtg 4569777  T
Q  106 tttctcaaccc 116  Q
    |||| ||||||    
T  4569776 tttcccaaccc 4569766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 26323319 - 26323385
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcaccc 74  Q
    |||||||||||||| ||||| |||||||||| |||||| |||| |||||| || |||||||||||||    
T  26323319 aaagagaaccaacccttagcttttgatttcctaaggatattcttttttggtctcccaagactcaccc 26323385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 43403976 - 43404143
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaa-aactctcctttgatgtg 105  Q
    ||||||||||||||  |||||||||||||| | ||||||||||| |||| |  |  |||||||||||||||||||||  |||  |||||||  | |||||    
T  43403976 aaagagaaccaacccatagcctttgatttcactaaggatcttctcttttagtttcacaagactcacccaagttgctcccaaatgactctccactcatgtg 43404075  T
Q  106 tttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttggttc 174  Q
    |||  |||||| | |||  ||| ||| ||||||||||||||| | |||||||||||| ||| ||||||||    
T  43404076 ttttccaaccccatgaa--tcttccccaaaaggcaccaacccttttcccaagagccccctcttttggttc 43404143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 174
Target Start/End: Original strand, 5434116 - 5434288
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttga 101  Q
    |||| |||||||| ||| | |||| |||||||| |  ||||||||||| ||||||  | ||||||||||||||| ||||||| |||| |||||||  | |    
T  5434116 ccccaaaagagaatcaatctttagtctttgattacataaggatcttctcttttggtttcccaagactcacccaacttgctcacaaaagactctccactca 5434215  T
Q  102 tgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttggttc 174  Q
    ||||||||  ||||| | ||| ||||||| |||||  ||| ||||| | |||||||||||| ||| ||||||||    
T  5434216 tgtgtttcctaaccccatgaatctctccctaaaaa-acactaacccttttcccaagagccccctcttttggttc 5434288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 36018782 - 36018673
Alignment:
Q  2 acccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaa-aactctccttt 99  Q
    ||||| |||||||||||| |  |||||||||||||| | ||||||||||| ||||||  |  |||||||||||||||||||||| |||  ||||||| ||    
T  36018782 accccaaaagagaaccaatccatagcctttgatttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaatgactctccatt 36018683  T
Q  100 gatgtgtttc 109  Q
     |||||||||    
T  36018682 catgtgtttc 36018673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 43402033 - 43402200
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaa-aactctcctttgatgtg 105  Q
    ||||||||||||||  |||||||||||||| | ||||||||||| ||||||  |  ||||||| |||||||||| ||| |||  | |||||  | |||||    
T  43402033 aaagagaaccaacccatagcctttgatttcactaaggatcttctcttttggtttcacaagacttacccaagttgttcacaaatgattctccactcatgtg 43402132  T
Q  106 tttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttggttc 174  Q
    |||| |||||| | |||  ||| ||| ||||||||||||||| | || ||||||||| ||| ||||||||    
T  43402133 tttcccaaccccatgaa--tcttccccaaaaggcaccaacccttttctcaagagccccctcttttggttc 43402200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 55302208 - 55302290
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa 89  Q
    ||||||||||||||  |||||||||||||| | ||||||||||| ||||||  |  |||||||||| ||||||||||| ||||    
T  55302208 aaagagaaccaacccctagcctttgatttcactaaggatcttctcttttggtttcacaagactcactcaagttgctcacaaaa 55302290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 30236055 - 30235973
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctca 84  Q
    |||| |||||||||||| | |||||||| |||||| | ||||||||||| ||||||  |  |||||||||||||| |||||||    
T  30236055 ccccaaaagagaaccaatcattagccttcgatttcactaaggatcttctcttttggtttcacaagactcacccaacttgctca 30235973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 41819767 - 41819931
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaa-aactctcctttgatgtgt 106  Q
    |||||||||||||| ||||| |||||||||  || |||||||| ||||||  |   ||||||||| ||||||||||| |||  | |||||  | ||||||    
T  41819767 aaagagaaccaacccttagc-tttgatttcataaagatcttctcttttggtttcataagactcactcaagttgctcacaaatgagtctccactcatgtgt 41819865  T
Q  107 ttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttggttc 174  Q
    ||| |||||| | ||| || ||||  ||||||||||||||| | |||||||||||| ||| ||||||||    
T  41819866 ttcccaaccccatgaatct-tccc--aaaaggcaccaacccttttcccaagagccccctcttttggttc 41819931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 40585654 - 40585549
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaaactctcctttgat 102  Q
    |||| |||||||||||||| |||| ||||||||||| ||||||||||| |||||| || |||| |||||||||| ||||||| ||| |||||||||||||    
T  40585654 ccccaaaagagaaccaacccttagtctttgatttcctaaggatcttctcttttggtctaccaatactcacccaaattgctcacaaagactctcctttgat 40585555  T
Q  103 gtgttt 108  Q
    ||||||    
T  40585554 gtgttt 40585549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 40221675 - 40221503
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttg 100  Q
    |||| |||||||||||||| ||||||||||||||| | ||||||||||| ||||||  || ||||||||||| |||||||||| |||| |||||||  |     
T  40221675 ccccaaaagagaaccaacctttagcctttgatttcactaaggatcttctcttttggttttacaagactcacctaagttgctcacaaaagactctccactc 40221576  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaa-ccctctcccaagagccctctcatttggttc 174  Q
    ||||||||| |||||| | |||  ||| ||| ||||||||| || |||| |||||||||||| ||  ||||||||    
T  40221575 atgtgtttcccaaccccatgaa--tcttccccaaaaggcactaacccctttcccaagagccccctattttggttc 40221503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 42435234 - 42435401
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttgatgtg 105  Q
    |||||||||||||| ||||||||||||||| | ||||||||||| ||||||  |  |||||||||| ||||||||||| |||| ||||||| || || ||    
T  42435234 aaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacaagactcactcaagttgctcacaaaagactctccattcatatg 42435333  T
Q  106 tttctcaaccctacgaacctctccccaaaaaggcaccaacc-ctctcccaagagccctctcatttggttc 174  Q
    |||| |||||| | |||  ||| ||| ||||| ||||||||  | |||||||||||| ||| ||||||||    
T  42435334 tttcccaaccccatgaa--tcttccccaaaagtcaccaacctttttcccaagagccccctcttttggttc 42435401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 11383916 - 11383829
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa 89  Q
    |||| |||||||||||||| ||||||||||||||| | ||||||||||| ||||||  |  |||||||||||||||||||||| ||||    
T  11383916 ccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaa 11383829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 33655548 - 33655649
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaaactctcctttgatgtgtt 107  Q
    |||||||||||||| ||| |||||||||| | ||||||||||| |||||  || | |||| |||||||| ||||||| ||| || ||||||| |||||||    
T  33655548 aaagagaaccaacccttaacctttgattttctaaggatcttctcttttgttctcctaagattcacccaaattgctcacaaagacactcctttaatgtgtt 33655647  T
Q  108 tc 109  Q
    ||    
T  33655648 tc 33655649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 4283454 - 4283367
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa 89  Q
    |||| |||||||||||||| ||||||||||||||| | ||||||||||| ||||||  |  ||||||||| ||||||| |||| ||||    
T  4283454 ccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacaagactcaaccaagtttctcacaaaa 4283367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 40328709 - 40328537
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttg 100  Q
    |||| |||||||||||||   |||||||||||||| | || |||||||| ||||||  |  |||||||||||||||||||||| |||| ||||| |  |     
T  40328709 ccccaaaagagaaccaactcatagcctttgatttcactaaagatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctacactc 40328610  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttggttc 174  Q
    ||||||||| || ||| | |||  ||| ||| ||||||||||||||| | |||||||| ||| ||| ||||||||    
T  40328609 atgtgtttcccatccccatgaa--tcttccctaaaaggcaccaacccttttcccaagaaccccctcttttggttc 40328537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 44353722 - 44353640
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctca 84  Q
    |||| |||||||||||||| ||||||||||||||| | ||| ||||| | ||||||  |  ||||||||||||||||||||||    
T  44353722 ccccaaaagagaaccaacccttagcctttgatttcactaagaatcttttcttttggtttcacaagactcacccaagttgctca 44353640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 3846059 - 3846190
Alignment:
Q  4 ccccaaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaaactctcctttgatg 103  Q
    |||||||  ||||||||| ||  ||||||||||||||| |||| ||| ||||||  | | |||| | |||||| ||||||| ||| | ||| || | |||    
T  3846059 ccccaaaatgaaccaaccatttacctttgatttccaaaagatcgtctcttttggtatccaaagatttacccaatttgctcacaaagaatcttctctcatg 3846158  T
Q  104 tgtttctcaaccctacgaacctctccccaaaa 135  Q
    |||||| |||||| | ||| ||||||||||||    
T  3846159 tgtttcccaaccccatgaatctctccccaaaa 3846190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 10240086 - 10239938
Alignment:
Q  4 ccccaaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaaactctcctttgatg 103  Q
    |||||||||||||||||  |||||||  |||||   ||||||||||| |||| |   ||||||| ||| ||||||| |||| ||| ||| || |||||||    
T  10240086 ccccaaagagaaccaactcttagcct--gattttttaaggatcttcttttttagtagtccaagattcatccaagttactcacaaagactttcatttgatg 10239989  T
Q  104 tgtttctcaaccctacgaacctctccccaaaaaggcaccaaccctctcccaa 155  Q
    |||||   ||||| ||||| || | |||||||||||| |||| || ||||||    
T  10239988 tgttttctaaccccacgaatctat-cccaaaaaggcagcaacactttcccaa 10239938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 3786019 - 3785849
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaaactctcctttgat 102  Q
    |||| |||||||||||||  |||||||||||||||| |||||| |||| |||||| || ||||||||| | ||| ||||||| ||| ||||||||||||     
T  3786019 ccccaaaagagaaccaactcttagcctttgatttcctaaggatattctcttttggtctcccaagactcgcacaatttgctcacaaagactctcctttgaa 3785920  T
Q  103 gtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccctctcccaagagccctctcatttggttc 174  Q
    ||||| ||| |||| |  |  |||||| | |||||||||||||||| | |||||||||| ||| ||||||||    
T  3785919 gtgttcctcgaccccataattctctcctc-aaaaggcaccaacccttttccaagagccccctcttttggttc 3785849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 174
Target Start/End: Original strand, 22882992 - 22883162
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaaactctcctttgat 102  Q
    |||| |||||||||||||| ||| |||||||||| | ||||||||||| |||||| || | ||||||| ||||| ||||||| ||| |||||| ||||||    
T  22882992 ccccaaaagagaaccaaccattatcctttgattttctaaggatcttctcttttggtctcctaagactcgcccaaattgctcacaaagactctcatttgat 22883091  T
Q  103 gtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccctctcccaagagccctctcatttggttc 174  Q
    |||||||  ||||||| ||  ||||| || |||||| | || ||||||||||||||||| ||| ||| ||||    
T  22883092 gtgtttcctaaccctatgagtctctctcc-aaaaggtatcagccctctcccaagagccccctctttttgttc 22883162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 174
Target Start/End: Original strand, 22934656 - 22934826
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaaactctcctttgat 102  Q
    |||| |||||||||||||| ||| |||||||||| | ||||||||||| |||||| || | ||||||| ||||| ||||||| ||| |||||| ||||||    
T  22934656 ccccaaaagagaaccaaccattatcctttgattttctaaggatcttctcttttggtctcctaagactcgcccaaattgctcacaaagactctcatttgat 22934755  T
Q  103 gtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccctctcccaagagccctctcatttggttc 174  Q
    |||||||  ||||||| ||  ||||| || |||||| | || ||||||||||||||||| ||| ||| ||||    
T  22934756 gtgtttcctaaccctatgagtctctctcc-aaaaggtatcagccctctcccaagagccccctctttttgttc 22934826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 35370581 - 35370729
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaaactctcctttgatgtgtt 107  Q
    |||||||||||||| |||||||||||||||| || |||||||||||||||  | |  |||||||||||||||||| | ||| ||||||||||||||| ||    
T  35370581 aaagagaaccaaccattagcctttgatttcccaaagatcttctattttggtatccatagactcacccaagttgcttacaaagactctcctttgatgtttt 35370680  T
Q  108 tctcaaccctacgaacctctccccaaaaaggcaccaaccctctcccaaga 157  Q
    | ||||||  | ||| ||||   | |||||| ||||||||||||||||||    
T  35370681 tatcaacctcatgaatctct-ttcgaaaagggaccaaccctctcccaaga 35370729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 41961335 - 41961179
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaa-----gttgctcataaaaactctcctttgat 102  Q
    |||||||||||||| ||||| |||||||||| |||||| |||| |||||| || |||||||||||||||     |||||||| | | |||||||||| ||    
T  41961335 aaagagaaccaacccttagcttttgatttcctaaggatattcttttttggtctcccaagactcacccaagttacgttgctcacatagactctcctttaat 41961236  T
Q  103 gtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccctctcccaagagccc 161  Q
    ||||||| |||||| | ||| ||||||||||||| ||||| ||| |||||| |||||||    
T  41961235 gtgtttcccaaccc-atgaatctctccccaaaaa-gcaccgaccttctccctagagccc 41961179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 35662365 - 35662200
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaa-aactctcctttgatgtgt 106  Q
    |||||||||||||| ||||| |||||||||| ||||||||||| ||||||  |  |||||||||||||||||||||| ||| |||||||| || ||||||    
T  35662365 aaagagaaccaacccttagc-tttgatttcctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaagaactctccattcatgtgt 35662267  T
Q  107 ttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttggttc 174  Q
    ||  |||||| | |||  ||| ||| ||||||||||||||| | ||| |||||||| ||| ||||||||    
T  35662266 tttccaaccccatgaa--tcttccccaaaaggcaccaacccttttcctaagagccccctcttttggttc 35662200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 33989786 - 33989621
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttgatgtgt 106  Q
    ||||||||| || | ||||||||||||| || ||||||||||| ||||||  |   ||||||||||||||||||||| |||  |||||||  | ||||||    
T  33989786 aaagagaacaaatccttagcctttgattacctaaggatcttctcttttggtttcaaaagactcacccaagttgctcacaaatgactctccactcatgtgt 33989687  T
Q  107 ttctcaaccctacgaacctctccccaaaaaggcaccaaccctctcccaagagccctctcatttggttc 174  Q
    ||| ||| || | ||| |||||||  |||||||||||||| |||||||||||||| ||  ||||||||    
T  33989686 ttcccaatcccatgaatctctccc--aaaaggcaccaaccttctcccaagagccccctattttggttc 33989621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 157
Target Start/End: Original strand, 35369678 - 35369831
Alignment:
Q  2 acccccaaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttcca-agactcacccaagttgctcataaaaactctcctttg 100  Q
    ||||| |||||||||||||| ||||||||||||| ||||| ||||||||||||| ||  |||| |||||||||||||||||| | ||| ||| || ||||    
T  35369678 accccaaaagagaaccaacccttagcctttgattcccaaa-gatcttctatttt-gctatccatagactcacccaagttgcttacaaagactatcttttg 35369775  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccctctcccaaga 157  Q
    |||||||||| ||||  | ||| ||||   | |||||| ||||||||||||||||||    
T  35369776 atgtgtttctaaacctcatgaatctct-ttcgaaaagggaccaaccctctcccaaga 35369831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 148
Target Start/End: Original strand, 50674084 - 50674229
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttg 100  Q
    |||| |||||||||||||| ||||||||||||||| | ||||||||||| ||||||  |  |||||||||||||||||||||| |||| |||||||  |     
T  50674084 ccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactc 50674183  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccct 148  Q
    ||||||||| |||||| | ||| || ||||  | ||||||||||||||    
T  50674184 atgtgtttcccaaccccatgaatctttccc--ataaggcaccaaccct 50674229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 174
Target Start/End: Original strand, 55085601 - 55085775
Alignment:
Q  2 acccccaaag-agaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaa-aactctcctt 98  Q
    |||||||||| |||| ||||| ||||||||||||||| | ||||||||||| ||||||  |  |||||||||| ||||||||||| |||  |||||||      
T  55085601 acccccaaaggagaatcaacccttagcctttgatttcactaaggatcttctcttttggtttcacaagactcacacaagttgctcacaaatgactctccac 55085700  T
Q  99 tgatgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccctct-cccaagagccctctcatttggttc 174  Q
    | ||||||||| |||||| | |||  ||| ||| |||||||||||||||| | ||||||||||| ||| ||||||||    
T  55085701 tcatgtgtttcccaaccccatgaa--tcttccccaaaaggcaccaaccctttccccaagagccccctcttttggttc 55085775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 379303 - 379227
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctca 84  Q
    |||||||||||||| |||||||||||||||| ||||||||||| |||||   |  ||||||||||||||||||||||    
T  379303 aaagagaaccaacccttagcctttgatttcctaaggatcttctcttttgatttcacaagactcacccaagttgctca 379227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 41964346 - 41964258
Alignment:
Q  2 acccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa 89  Q
    ||||| |||||||||||||| ||||||||||||||| | ||||||||||| ||||||  |  |||||||||||||||||||||| ||||    
T  41964346 accccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaa 41964258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 170
Target Start/End: Complemental strand, 46703429 - 46703263
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttga 101  Q
    |||| |||||||||||||  |||||||||||||||| |||||| |||| ||||||  |  |||||||||||||||||||| | |||| ||||||| || |    
T  46703429 ccccaaaagagaaccaacttttagcctttgatttcctaaggattttctcttttggtttcacaagactcacccaagttgctgacaaaagactctccattca 46703330  T
Q  102 tgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttg 170  Q
    ||| |||| || ||| | |||  ||| ||| ||||||||||||||| | |||||||||||| ||| ||||    
T  46703329 tgt-tttcccatccccatgaa--tcttccccaaaaggcaccaacccttttcccaagagccccctcttttg 46703263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 34112536 - 34112396
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcata-aaaactctcctttgatgtgt 106  Q
    |||||||||||| | |||||||||||||||| ||||||||||  |||||   |||||||| ||| |||||||||||| | |  |||||||  | ||||||    
T  34112536 aaagagaaccaaactttagcctttgatttcctaaggatcttcagttttgtttttccaagattcatccaagttgctcacagatgactctccactcatgtgt 34112437  T
Q  107 ttctcaaccctacgaacctctccccaaaaaggcaccaaccct 148  Q
    ||  ||||||   |||||||||||| ||||||||||||||||    
T  34112436 tttccaaccccgtgaacctctcccc-aaaaggcaccaaccct 34112396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 174
Target Start/End: Complemental strand, 8665313 - 8665165
Alignment:
Q  27 cctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttgatgtgtttctcaaccctacgaacc 124  Q
    ||||||||||| | ||||||||||| ||||||  |  |||||||||||||||||||||| |||| |||||||  |  |||||||| |||||| | |||      
T  8665313 cctttgatttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcctgtgtttcccaaccccatgaa-- 8665216  T
Q  125 tctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttggttc 174  Q
    ||| ||| ||||||||||||||| | |||||||||||| ||| ||||||||    
T  8665215 tcttccccaaaaggcaccaacccttttcccaagagccccctcttttggttc 8665165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 174
Target Start/End: Original strand, 50262936 - 50263108
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttg 100  Q
    |||| |||||||||||||| ||||||||||||||| | |||| |||||| ||||||  |  ||||| ||||| | |||||||| |||| |||||||  |     
T  50262936 ccccaaaagagaaccaaccattagcctttgatttcactaagggtcttctcttttggtttcacaagagtcaccgaggttgctcacaaaagactctccactc 50263035  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttggttc 174  Q
    ||||||||| |||||| | |||  ||| ||| ||||||||||||||| | | |||||||||| ||| ||||||||    
T  50263036 atgtgtttcccaaccccatgaa--tcttccccaaaaggcaccaaccctttttccaagagccccctcttttggttc 50263108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 6655881 - 6655714
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaa-aactctcctttgatgtg 105  Q
    |||||||| ||||| ||||||||||||||  | || |||||||| ||||||  |  |||||||||||||||||||||| |||  |||||||  | |||||    
T  6655881 aaagagaaacaacctttagcctttgattttactaatgatcttctcttttggtttcacaagactcacccaagttgctcagaaatgactctccactcatgtg 6655782  T
Q  106 tttctcaaccctacgaacctctccccaaaaaggcaccaaccctct-cccaagagccctctcatttggttc 174  Q
    |||| |||||| | |||  ||| | | |||||||||||||||| | ||||||||||| ||| ||||||||    
T  6655781 tttcccaaccccatgaa--tcttctccaaaaggcaccaaccctttccccaagagccccctcttttggttc 6655714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 26364190 - 26364080
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaa-aactctcctttgatgtg 105  Q
    |||||||||||||| ||||| ||||||||| | ||||||||||| ||||||  |  |||||||||||||||||||||| |||  |||||||  | |||||    
T  26364190 aaagagaaccaacccttagcatttgatttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaatgactctccactcatgtg 26364091  T
Q  106 tttctcaaccc 116  Q
    |||| ||||||    
T  26364090 tttcccaaccc 26364080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 22629148 - 22629241
Alignment:
Q  23 ttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaaactctcctttgatgtgtttctcaaccc 116  Q
    |||||||||||||| | ||||||||| ||| |||| || |||||| |||| ||| ||||||| | | |||||||| | ||||||||||||||||    
T  22629148 ttagcctttgattttctaaggatcttttatgttggtctcccaagattcactcaaattgctcagagatactctcctctcatgtgtttctcaaccc 22629241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 148
Target Start/End: Complemental strand, 54882950 - 54882805
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttg 100  Q
    |||| |||||||||||||| ||||||||||||||| | ||||||||||| ||||||  |  | ||||||||||||||| |||| |||| ||||| |  |     
T  54882950 ccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacgagactcacccaagtttctcacaaaagactctacactc 54882851  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccct 148  Q
    ||||||||| |||||| | |||  ||| | | ||||||||||||||||    
T  54882850 atgtgtttcccaaccccatgaa--tcttctccaaaaggcaccaaccct 54882805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 8648068 - 8647896
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttg 100  Q
    |||| |||||||||||||   || | ||||||||| | ||||||||||| |||||   |  |||||||||||||||||||||| |||| |||||||  |     
T  8648068 ccccaaaagagaaccaacacataacatttgatttcactaaggatcttctcttttgatttcacaagactcacccaagttgctcacaaaagactctccactc 8647969  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttggttc 174  Q
     |||||||| |||||| | |||  ||| ||| ||||||||||||||| | |||||||||||| ||| ||||||||    
T  8647968 ctgtgtttcccaaccccatgaa--tcttccccaaaaggcaccaacccttttcccaagagccccctcttttggttc 8647896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 12073322 - 12073235
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa 89  Q
    |||| |||||||||||||| ||||| ||||||||| | ||||||||||| ||||||  |   ||||||||||||||||||||| ||||    
T  12073322 ccccaaaagagaaccaacccttagcatttgatttcactaaggatcttctcttttggtttcataagactcacccaagttgctcacaaaa 12073235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 27417199 - 27417273
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaa 76  Q
    |||| |||||||||||||| |||| |||||||||| | ||||||||||| ||||||  || ||||||||||||||    
T  27417199 ccccaaaagagaaccaacccttagtctttgatttcactaaggatcttcttttttggttttacaagactcacccaa 27417273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 33089812 - 33089754
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaag 66  Q
    |||||||||||||| |||||||||||||| | ||||||||||| |||||| || |||||    
T  33089812 aaagagaaccaacctttagcctttgattttctaaggatcttctcttttggtctcccaag 33089754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 148
Target Start/End: Complemental strand, 40630876 - 40630769
Alignment:
Q  40 aaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttgatgtgtttctcaaccctacgaacctctccccaaaaagg 138  Q
    ||||||||||| ||||||  |  |||||||||||||||||||||| |||| |||||||  | ||||||||| |||||| | |||  ||| ||| ||||||    
T  40630876 aaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaa--tcttccccaaaagg 40630779  T
Q  139 caccaaccct 148  Q
    ||||||||||    
T  40630778 caccaaccct 40630769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 135
Target Start/End: Original strand, 25723493 - 25723588
Alignment:
Q  40 aaggatcttctattttggccttccaagactcacccaagttgctcataaaaactctcctttgatgtgtttctcaaccctacgaacctctccccaaaa 135  Q
    |||| |||||| ||| || || |||| ||||||  |||||| ||| ||| |||||| ||||||||||||| |||||| ||||| ||||| ||||||    
T  25723493 aagggtcttctctttcggtctaccaaaactcacttaagttgttcacaaagactctcttttgatgtgtttcccaaccccacgaagctctctccaaaa 25723588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 174
Target Start/End: Original strand, 490745 - 490854
Alignment:
Q  64 aagactcacccaagttgctcataaaaactctcctttgatgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccctctcccaagagccctc 163  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||| || | ||| ||||| ||  ||||||||||||||||||| |||||||| |    
T  490745 aagactcgcccaagttgctcataaaaactctcctttgatgtgtttcccaatcccatgaatctctcacc-taaaggcaccaaccctctccaaagagccccc 490843  T
Q  164 tcatttggttc 174  Q
    |  ||||||||    
T  490844 ttttttggttc 490854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 174
Target Start/End: Original strand, 4512628 - 4512799
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttg 100  Q
    |||| ||||||||| |||| ||||||||||||||| | ||||||||||| ||||||  |  |||||||||||||||||||||| |||  |||||||  |     
T  4512628 ccccaaaagagaactaacccttagcctttgatttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaatgactctccactc 4512727  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccctctcccaagagccctctcatttggttc 174  Q
    |||||||||  ||||| | |||  ||| ||| |||||||||||||||| |||||||||||| ||| ||||||||    
T  4512728 atgtgtttccaaaccccatgaa--tcttccccaaaaggcaccaaccctttcccaagagccccctcttttggttc 4512799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 174
Target Start/End: Original strand, 34310954 - 34311126
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttg 100  Q
    |||| |||||||||||||| ||||||||||||||| | ||||||||||| ||||||  |  |||||||||||||||||||||| |||| |||||||  |     
T  34310954 ccccaaaagagaaccaacctttagcctttgatttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactc 34311053  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttggttc 174  Q
    ||||||||  || ||| | |||||| ||||| ||||||||||||||| | |||||||||||| ||| ||||||||    
T  34311054 atgtgttttccatccccatgaacct-tcccc-aaaaggcaccaacccttttcccaagagccccctcttttggttc 34311126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 4510791 - 4510957
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaa-aactctcctttgatgtg 105  Q
    |||||||||||| ||||||||||||||||| | ||||||||||| ||||||  |  ||||||||||| |||||||||| |||  |||||||  | |||||    
T  4510791 aaagagaaccaatcgttagcctttgatttcactaaggatcttctcttttggtttcacaagactcaccaaagttgctcacaaatgactctccactcatgtg 4510890  T
Q  106 tttctcaaccctacgaacctctccccaaaaaggcaccaaccctctcccaagagccctctcatttggttc 174  Q
    |||| |||||| | |||  ||| ||| |||||||||||||||| |||||||||| | ||| ||||||||    
T  4510891 tttcccaaccccatgaa--tcttccccaaaaggcaccaaccctttcccaagagctccctcttttggttc 4510957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 29608666 - 29608551
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttg 100  Q
    |||| |||||||||||||| ||||||||||||||| | ||| ||||||||||||||  |  |||||||||||||||||||||| |||| |||||||  |     
T  29608666 ccccaaaagagaaccaacccttagcctttgatttcactaagaatcttctattttggtttcacaagactcacccaagttgctcacaaaagactctccactc 29608567  T
Q  101 atgtgtttctcaaccc 116  Q
    ||||||||| ||||||    
T  29608566 atgtgtttcccaaccc 29608551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 6431896 - 6431729
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttgatgtg 105  Q
    |||||||||||||| ||||| ||||||||| | ||||||||||| ||||||  |  |||||||||||||||||||||| |||| ||||| |  | |||||    
T  6431896 aaagagaaccaacccttagcatttgatttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctacactcatgtg 6431797  T
Q  106 tttctcaaccctacgaacctctccccaaaaaggcaccaaccctct-cccaagagccctctcatttggttc 174  Q
    |||  |||||| | |||  ||| ||| |||||||||||||||| | ||||||||||| ||| ||||||||    
T  6431796 ttttccaaccccatgaa--tcttccccaaaaggcaccaaccctttccccaagagccccctcttttggttc 6431729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 4508949 - 4509115
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttgatgtg 105  Q
    |||||||||||| | ||||||||||||||| | ||||||||| | ||||||  |  ||||||||||| |||||||||| |||  |||||||  | |||||    
T  4508949 aaagagaaccaatccttagcctttgatttcactaaggatcttatcttttggtttcacaagactcaccaaagttgctcacaaatgactctccactcatgtg 4509048  T
Q  106 tttctcaaccctacgaacctctccccaaaaaggcaccaaccctctcccaagagccctctcatttggttc 174  Q
    |||| |||||| | |||  ||| ||| |||||||||||||||| |||||||||| | ||| ||||||||    
T  4509049 tttcccaaccccatgaa--tcttccccaaaaggcaccaaccctttcccaagagctccctcttttggttc 4509115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 175
Target Start/End: Original strand, 48599572 - 48599745
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttg 100  Q
    |||| |||||||||||||| ||||||||||||||| | ||||||||||| ||||||  |  |||||||||||||||||||||| |||| ||||||   |     
T  48599572 ccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctctactc 48599671  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttggttca 175  Q
    |||| |||  |||||| | |||  ||| ||| ||||||||||||||| | || ||||||||| ||| |||||||||    
T  48599672 atgttttttccaaccccatgaa--tcttccccaaaaggcaccaacccttttcacaagagccccctcttttggttca 48599745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 2361214 - 2361354
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttgatgtg 105  Q
    |||||||||||||| ||||||||||||||| | ||||||||||| ||||||  |   ||||||||||||||||||||| |||| |||||||  | |||||    
T  2361214 aaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcataagactcacccaagttgctcacaaaagactctccactcatgtg 2361313  T
Q  106 tttctcaaccctacgaacctctccccaaaaaggcaccaaccct 148  Q
    |||| |||||| | |||  ||  ||| ||||||||||||||||    
T  2361314 tttcccaaccccatgaa--tcatccccaaaaggcaccaaccct 2361354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 2390212 - 2390125
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa 89  Q
    |||| |||||||||||||| ||||||||||||||| | ||||||||||| ||||||  |  |||||||||||||||||||||| ||||    
T  2390212 ccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaa 2390125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 161
Target Start/End: Complemental strand, 3258926 - 3258767
Alignment:
Q  2 acccccaaa-gagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctccttt 99  Q
    ||||||||| ||||||||||| ||||  |||||||||| ||||||||||| ||||||  |  |||||||||||||||||||| |||||| |||||||  |    
T  3258926 acccccaaatgagaaccaacccttagg-tttgatttcctaaggatcttctcttttggtttcacaagactcacccaagttgctaataaaagactctccact 3258828  T
Q  100 gatgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccc 161  Q
     || |||||| || ||| | |||  ||| ||| ||||||||||||||| | ||||||||||||    
T  3258827 catatgtttcccatccccatgaa--tcttccccaaaaggcaccaacccttttcccaagagccc 3258767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 6360150 - 6360232
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctca 84  Q
    |||| |||||||||||||| ||||||||||||||| | ||||||||||| |||||   |  ||||||||||||||||||||||    
T  6360150 ccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttgatttcacaagactcacccaagttgctca 6360232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 1360393 - 1360497
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaaactctcctttgat 102  Q
    |||| |||||||||||| |  || |||||||||||| ||  || |||| ||||||  ||||||||||||| ||||||||||   ||||||||||||||||    
T  1360393 ccccaaaagagaaccaatccatatcctttgatttcccaaaaatattctcttttggttttccaagactcactcaagttgctc-gcaaaactctcctttgat 1360491  T
Q  103 gtgttt 108  Q
    ||||||    
T  1360492 gtgttt 1360497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 174
Target Start/End: Original strand, 22328637 - 22328809
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaa-aactctcctttga 101  Q
    |||| |||||||||||||| ||||| ||||||| |  |||||| |||| |||| |  | |||||| |||||||||||||||| |||  ||||||   | |    
T  22328637 ccccaaaagagaaccaacccttagcttttgattacataaggatattctcttttagtttcccaagattcacccaagttgctcacaaatgactctctactca 22328736  T
Q  102 tgtgtttctcaaccctacgaacctctccccaaaaaggcaccaac-cctctcccaagagccctctcatttggttc 174  Q
    ||| |||| |||||||| ||| |||||||| ||||||||||||| | | ||| |||||||| ||| ||||||||    
T  22328737 tgtttttcccaaccctatgaatctctcccc-aaaaggcaccaactcttttcctaagagccccctcttttggttc 22328809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 155
Target Start/End: Original strand, 8359567 - 8359708
Alignment:
Q  14 aaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttgatgtgtttctc 111  Q
    |||||||  ||||||||||||||| | |||||| |||| ||||||  |  ||||||||| |||||||||||| |||| |||||||  | ||||||||| |    
T  8359567 aaccaactcttagcctttgatttcactaaggattttctcttttggtttcacaagactcatccaagttgctcacaaaagactctccactcatgtgtttccc 8359666  T
Q  112 aaccctacgaacctctccccaaaaaggcaccaaccctctcccaa 155  Q
    ||||| | |||  ||| ||| |||||||||||||||| ||||||    
T  8359667 aaccccatgaa--tcttccccaaaaggcaccaaccctttcccaa 8359708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 22269903 - 22269733
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataa-aaactctcctttg 100  Q
    |||| ||||||||||||||  |||||| ||||||| | ||||||||||||||||||  |  ||||||||||||||||| |||  || | |||||||  |     
T  22269903 ccccaaaagagaaccaacccatagcctatgatttcactaaggatcttctattttggtttcacaagactcacccaagtttctctcaatagactctccactc 22269804  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccctctcccaagagccctctcatttggttc 174  Q
    ||||||||| |  ||| | |||  ||| ||| ||||||||||||| || |||||||||||| ||| ||||||||    
T  22269803 atgtgtttcccctccccatgaa--tcttccccaaaaggcaccaactctttcccaagagccc-ctcttttggttc 22269733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 174
Target Start/End: Complemental strand, 5116540 - 5116393
Alignment:
Q  27 cctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaa-aactctcctttgatgtgtttctcaaccctacgaacct 125  Q
    ||||||||||||  |||||||||| ||||||    |||||||||||| |||||  ||| |||  || ||| ||||| ||||||  ||| || | ||| ||    
T  5116540 cctttgatttcctgaggatcttctcttttggttacccaagactcacctaagtttatcacaaatgaccctcatttgaagtgtttaccaatccaatgaatct 5116441  T
Q  126 ctccccaaaaaggcaccaaccctctcccaagagccctctcatttggttc 174  Q
    ||| || |||||||||| |||||||||||||||||| ||| ||||||||    
T  5116440 ctctcc-aaaaggcaccgaccctctcccaagagccccctcttttggttc 5116393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 43363667 - 43363767
Alignment:
Q  17 caaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaaactctcctttgatgtgtttctcaaccc 116  Q
    ||||| ||||| ||| |||||| || |||||||| |||||| ||  ||||| |||||||| ||||||| ||  |||||| | | ||||||||||||||||    
T  43363667 caacccttagcatttaatttcctaaagatcttctcttttggtctctcaagattcacccaaattgctcacaaggactctcatctcatgtgtttctcaaccc 43363766  T
Q  117 t 117  Q
    |    
T  43363767 t 43363767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 174
Target Start/End: Original strand, 42261910 - 42262019
Alignment:
Q  64 aagactcacccaagttgctcataaaaactctcctttgatgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccctctcccaagagccctc 163  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||| || | ||| ||||| ||  ||||||||||||||||||| |||||||| |    
T  42261910 aagactcgcccaagttgctcataaaaactctcctttgatgtgtttcccaatcccatgaatctctcacc-taaaggcaccaaccctctccaaagagccccc 42262008  T
Q  164 tcatttggttc 174  Q
    |  ||||||||    
T  42262009 ttttttggttc 42262019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 42288353 - 42288519
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttgatgtg 105  Q
    |||||||||||||| ||||||||||||||| | ||||||||||| ||||||  |  |||||||||||||||||||||| |||| |||||||  | |||||    
T  42288353 aaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtg 42288452  T
Q  106 tttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttggttc 174  Q
    |||| |||||| | ||| || ||||  ||||||||||||||| | |||||||||||| ||| ||||||||    
T  42288453 tttcccaaccccatgaatct-tccc--aaaaggcaccaacccttttcccaagagccccctcttttggttc 42288519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 148
Target Start/End: Original strand, 35447122 - 35447267
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttg 100  Q
    |||| |||||||||||||| ||||||||||||||| | ||| ||||||| ||||||  || |||||||||||||||||||||| |||| |||||||  |     
T  35447122 ccccaaaagagaaccaacccttagcctttgatttcactaagtatcttctcttttggttttacaagactcacccaagttgctcacaaaagactctccactc 35447221  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccct 148  Q
    ||||||||| |||||| | ||| || ||||  ||||||||||||||||    
T  35447222 atgtgtttcccaaccccatgaatctttccc--aaaaggcaccaaccct 35447267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 174
Target Start/End: Original strand, 1631970 - 1632142
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttg 100  Q
    |||| |||||||||||||| ||||||||||||||| | ||||||||||| ||||||  |  |||||||||||||||||||||| |||| |||||||  |     
T  1631970 ccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactc 1632069  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttggttc 174  Q
    ||||||||| |||||| | |||  ||| ||| ||||| ||||||||| | || ||||||||| ||| ||||||||    
T  1632070 atgtgtttcccaaccccatgaa--tcttccccaaaagacaccaacccttttcacaagagccccctcttttggttc 1632142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 45726859 - 45726688
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaa-aactctcctttg 100  Q
    |||| |||||||||||||| ||||||||||||||| | ||||||||||| ||||||  |  || ||||||||||||||||||| |||  |||||||  |     
T  45726859 ccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacatgactcacccaagttgctcacaaatgactctccactc 45726760  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccctctcccaagagccctctcatttggttc 174  Q
    |||||||||  ||||| | |||  ||| ||| |||||||||||||||| |||||||||| | ||| ||||||||    
T  45726759 atgtgtttccaaaccccatgaa--tcttccccaaaaggcaccaaccctttcccaagagctccctcttttggttc 45726688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 163
Target Start/End: Original strand, 30218333 - 30218432
Alignment:
Q  63 caagactcacccaagttgctcataaaaactctcctttgatgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccctctcccaagagccct 162  Q
    |||||||||| ||||||||||| ||| | ||||||||| |||||||| |||||| | ||| |||||||| ||||||||| ||| ||||||||  ||||||    
T  30218333 caagactcactcaagttgctcacaaagattctcctttggtgtgtttcccaaccccatgaatctctcccc-aaaaggcactaactctctcccataagccct 30218431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 17450522 - 17450439
Alignment:
Q  2 acccccaa-agagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctca 84  Q
    |||||||| |||||| ||||| |||||||||||||||| || |||||||| ||||||  |  ||||||||||||||||| ||||    
T  17450522 acccccaatagagaatcaacccttagcctttgatttcctaatgatcttctcttttggtttcacaagactcacccaagtttctca 17450439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 43731066 - 43730983
Alignment:
Q  14 aaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaaactctcct 97  Q
    |||||||| |||| ||||||||||| | |||| |||||||||||  | |||||| |||||||| ||||||| ||||||| ||||    
T  43731066 aaccaacctttagactttgatttcctacggatattctattttggtttcccaagattcacccaaattgctcacaaaaactttcct 43730983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 24197698 - 24197657
Alignment:
Q  133 aaaaggcaccaaccctctcccaagagccctctcatttggttc 174  Q
    |||||||||||||||||||||||||| || ||| ||||||||    
T  24197698 aaaaggcaccaaccctctcccaagagtcccctcttttggttc 24197657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 7258 - 7086
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttg 100  Q
    |||| |||||||||||||| ||||||||||||||  | ||||||||||| ||||||  |  |||||||||||||||||||||| |||| |||||||  |     
T  7258 ccccaaaagagaaccaacccttagcctttgattttactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactc 7159  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttggttc 174  Q
    ||||||||  |||||| | |||  ||| ||| ||||||||||||||| | || ||||||||| ||| ||||||||    
T  7158 atgtgttttccaaccccatgaa--tcttccccaaaaggcaccaacccttttcacaagagccccctcttttggttc 7086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 174
Target Start/End: Original strand, 603318 - 603490
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaa-aactctcctttg 100  Q
    |||| |||||||||||||| ||||||||||||||| | ||||||||||| ||||||  |  |||||||||||||||||||||| |||  || ||||  |     
T  603318 ccccaaaagagaaccaaccattagcctttgatttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaggacactccactc 603417  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccctctcc-caagagccctctcatttggttc 174  Q
    ||||||||| |||||| | |||  ||| | | |||||||||||||||| ||| ||||||||| ||| ||||||||    
T  603418 atgtgtttcccaaccccatgaa--tcttctccaaaaggcaccaaccctttcctcaagagccccctcttttggttc 603490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 5043557 - 5043386
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttg 100  Q
    |||| |||||||||||||  ||||||||||||| | | ||||||||||| ||||||  |  |||||||||||||| ||||||| |||| |||||||  |     
T  5043557 ccccaaaagagaaccaactcttagcctttgattccactaaggatcttctcttttggtttcacaagactcacccaaattgctcacaaaagactctccactc 5043458  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttggttc 174  Q
    ||||||||| |||||| | ||| || ||||  ||||||||||||||| | |||||||||||||||| ||||||||    
T  5043457 atgtgtttcccaaccccatgaatct-tccc--aaaaggcaccaacccttttcccaagagccctctcttttggttc 5043386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 2973182 - 2973349
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaa-aactctcctttgatgtg 105  Q
    |||||||||||||| ||||||||||||||| | ||||||||||| ||||||  |  |||||||||||||||||| ||| |||  ||||| | || |||||    
T  2973182 aaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacaagactcacccaagttgttcacaaatgactctgcattcatgtg 2973281  T
Q  106 tttctcaaccctacgaacctctccccaaaaaggcaccaaccc-tctcccaagagccctctcatttggttc 174  Q
    |||| |||||| | |||  ||| |||||||| |||||||||| | || ||||||||| ||| ||||||||    
T  2973282 tttcccaaccccatgaa--tcttcccaaaaaagcaccaacccttttcacaagagccccctcttttggttc 2973349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 17762919 - 17762745
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttg 100  Q
    |||| |||||||||||||| ||||||||||||||| | ||||||||||| |||| |  |  |||||||||||||||||||||  |||| |||||||  |     
T  17762919 ccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctctttttgtttcacaagactcacccaagttgctcccaaaagactctccactc 17762820  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcacc-aaccctctcccaagagccctctcatttggttc 174  Q
    ||||||||| |||||| | ||| ||  |||| |||||||||| |||| | || ||||||||| ||| ||||||||    
T  17762819 atgtgtttcccaaccccatgaatctaacccccaaaaggcaccaaaccttttcacaagagccccctcttttggttc 17762745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 21593594 - 21593424
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaa-aactctcctttga 101  Q
    |||| |||||||||||||| ||||| |||||||||| ||||||||||| ||||||  |  |||||||||||||||||||||| |||  |||||||  | |    
T  21593594 ccccaaaagagaaccaacccttagc-tttgatttcctaaggatcttctcttttggtttcacaagactcacccaagttgctcaaaaatgactctccactca 21593496  T
Q  102 tgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccctct-cccaagagccctctcatttggttc 174  Q
    |||||||  |||||| | |||  ||| | | |||||||||||||||| | ||||||||||| ||| ||||||||    
T  21593495 tgtgttttccaaccccatgaa--tcttctccaaaaggcaccaaccctttccccaagagccccctcttttggttc 21593424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 116
Target Start/End: Original strand, 3808945 - 3809061
Alignment:
Q  2 acccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaa-aactctccttt 99  Q
    ||||||||| |||||||||| ||||||||||||||| | |||||| |||| ||||||  || |||||||||||||||||||||| |||  |||||||  |    
T  3808945 acccccaaaaagaaccaacccttagcctttgatttcactaaggattttctcttttggttttacaagactcacccaagttgctcacaaatgactctccact 3809044  T
Q  100 gatgtgtttctcaaccc 116  Q
     ||||||||| ||||||    
T  3809045 catgtgtttcccaaccc 3809061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 26830362 - 26830444
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctca 84  Q
    |||| |||||||||||||| ||||||||||||||| | ||| ||||||| ||||||  |  |||||||| |||||||||||||    
T  26830362 ccccaaaagagaaccaacccttagcctttgatttcactaagaatcttctcttttggtttcacaagactcgcccaagttgctca 26830444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 133
Target Start/End: Complemental strand, 25073076 - 25072983
Alignment:
Q  40 aaggatcttctattttggccttccaagactcacccaagttgctcataaaaactctcctttgatgtgtttctcaaccctacgaacctctccccaa 133  Q
    ||||||||||| ||||||  | |||||||  | ||||||| | |||||| ||||||||||||||||||||  ||||||| ||| |||| |||||    
T  25073076 aaggatcttctcttttggtttcccaagacctatccaagtttcacataaagactctcctttgatgtgtttccaaaccctatgaatctcttcccaa 25072983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 17757953 - 17757867
Alignment:
Q  63 caagactcacccaagttgctcataaaa-actctcctttgatgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccct 148  Q
    |||||||||||||||||||||| |||| |||||||  | ||||||||| |||||| | ||| ||  |||| |||| |||||||||||    
T  17757953 caagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatctaacccccaaaatgcaccaaccct 17757867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 22425064 - 22425149
Alignment:
Q  2 acccccaaagagaaccaaccgttagcctttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaa 88  Q
    ||||| |||||||||||||| ||||| |||||||||| |||||| |||| ||||||  |  ||||||| ||| ||||||||| ||||    
T  22425064 accccaaaagagaaccaacccttagc-tttgatttcctaaggatattctcttttggtttcacaagactaaccgaagttgctcttaaa 22425149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 33160704 - 33160744
Alignment:
Q  185 aaattgtgtcacgatttgcaccaatcgtgtcacgattgatg 225  Q
    ||||||||||||| ||| || ||||||||||||||||||||    
T  33160704 aaattgtgtcacgttttccatcaatcgtgtcacgattgatg 33160744  T

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Target: scaffold0197 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 174
Target Start/End: Original strand, 1671 - 1815
Alignment:
Q  29 tttgatttccaaaggatcttctattttggccttccaagactcacccaagttgctcataaaaactctcctttgatgtgtttctcaaccctacgaacctctc 128  Q
    |||||||||| ||||||||||| |||||  || ||||||||| ||||||||||||| ||  |||||| | ||||||||||||||||   | ||| |||||    
T  1671 tttgatttcctaaggatcttctcttttgatctcccaagactcgcccaagttgctcacaatgactctcatatgatgtgtttctcaactacatgaatctctc 1770  T
Q  129 cccaaaaaggcaccaaccctctcccaagagccctctcatttggttc 174  Q
    | | ||||| |||||| |||| |||||||| || ||| ||||||||    
T  1771 cac-aaaagacaccaagcctcgcccaagagtcccctcttttggttc 1815  T

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Target: scaffold0014 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 148
Target Start/End: Original strand, 80521 - 80666
Alignment:
Q  3 cccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaaa-actctcctttg 100  Q
    |||| ||| |||||||||| ||||||||||||||| | |||||||| || |||| |  | ||||||||||||||||||||||| |||| |||||||  |     
T  80521 ccccaaaatagaaccaacccttagcctttgatttcactaaggatctactcttttagtttcccaagactcacccaagttgctcacaaaagactctccgctc 80620  T
Q  101 atgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccct 148  Q
    ||||||||| |||||| | |||  ||| ||| ||||||||||||||||    
T  80621 atgtgtttcccaaccccatgaa--tcttccccaaaaggcaccaaccct 80666  T

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Target: scaffold0176 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 148
Target Start/End: Original strand, 18238 - 18384
Alignment:
Q  2 acccccaaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaa-aactctccttt 99  Q
    ||||| |||||||||||||  |||| |||||||||| | ||||||||||| ||||||  || |||||||||| ||||||||||| ||| ||||||||  |    
T  18238 accccaaaagagaaccaactcttagtctttgatttcactaaggatcttctcttttggttttacaagactcactcaagttgctcacaaataactctccact 18337  T
Q  100 gatgtgtttctcaaccctacgaacctctccccaaaaaggcaccaaccct 148  Q
     |||||||| ||||||  | ||| || ||||| ||||||||||||||||    
T  18338 catgtgttt-tcaacctcatgaatct-tcccccaaaaggcaccaaccct 18384  T

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Target: scaffold0286 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 11483 - 11316
Alignment:
Q  8 aaagagaaccaaccgttagcctttgatttc-caaaggatcttctattttggccttccaagactcacccaagttgctcataaa-aactctcctttgatgtg 105  Q
    |||||||| ||||| ||||||||||||||  | || |||||||| ||||||  |  |||||||||||||||||||||| |||  |||||||  | |||||    
T  11483 aaagagaaacaacctttagcctttgattttactaatgatcttctcttttggtttcacaagactcacccaagttgctcagaaatgactctccactcatgtg 11384  T
Q  106 tttctcaaccctacgaacctctccccaaaaaggcaccaaccctct-cccaagagccctctcatttggttc 174  Q
    |||| |||||| | |||  ||| | | |||||||||||||||| | |||||||||||  || ||||||||    
T  11383 tttcccaaccccatgaa--tcttctccaaaaggcaccaaccctttccccaagagccccatcttttggttc 11316  T

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