View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3276_high_27 (Length: 230)
Name: NF3276_high_27
Description: NF3276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3276_high_27 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 26278857 - 26278628
Alignment:
| Q |
1 |
atgggcttcaaagccaactgtatatctgcccctttgtatcaggaaaattgttcttctaactttagaattgcattaacaccccaaaattacctaattgaac |
100 |
Q |
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| T |
26278857 |
atgggcttcaaagccaactgtatatctgcccctttgtatcaggaaaattgttcttctaactttagaattgcattaacaccccaaaattacctaattgaac |
26278758 |
T |
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| Q |
101 |
tcaacggcagttaactattgctcaccccaaacgacggttaattgccgcagcgttctggtttattccagaatagcaacaatcgtttactgattctttcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
26278757 |
tcaacggcagttaactattgctcaccccaaacgacggttaattgccgcagcgttttggtttattccagaatagcaacagccgttaactgattctttcaaa |
26278658 |
T |
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| Q |
201 |
acacaacttcaatcaaaattctccctccat |
230 |
Q |
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|||| ||||||||||||||||||||||||| |
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| T |
26278657 |
acactacttcaatcaaaattctccctccat |
26278628 |
T |
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