View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3276_high_29 (Length: 226)
Name: NF3276_high_29
Description: NF3276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3276_high_29 |
 | |
|
| [»] chr4 (5 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 71 - 226
Target Start/End: Original strand, 12123850 - 12124026
Alignment:
| Q |
71 |
aactgtgaatatattaacttctaaaattttccaaatagacaaaaacaaagtccaacatcaactcattccgatagagttataagctgtcatgataacc--- |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||| |
|
|
| T |
12123850 |
aactgtgaatatattaacttctaaaattttccaaatagacaaaaacaaagtccaacatcaactcattccgatagagttataaggtctaatgataaccacc |
12123949 |
T |
|
| Q |
168 |
------------------attaaaattgtaagaacgaaacaccaaattggtccttaaaattataaattccgatcatt |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
12123950 |
tccacaggatgaaaaagaattaaaattgtaagaacgaaacaccaaattagtccttaagattataaattccgatcatt |
12124026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 12123664 - 12123741
Alignment:
| Q |
1 |
ttatgctctcaatgcttaagtgcttggtatcatattaatgttctagttacaacctcacaataaaaactgtaactgtgaa |
79 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12123664 |
ttatgctctcaatgcttaaatgcatggtatcatattaatgt-ctagttacaacctcacaataaaaactgtaattgtgaa |
12123741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 2374779 - 2374703
Alignment:
| Q |
1 |
ttatgctctcaatgcttaagtgcttggtatcatattaatgttctagttacaacctcacaataaaaactgtaactgtgaa |
79 |
Q |
| |
|
||||||||| ||||||||| |||||| ||||||||||||| ||||||||||||||||| | |||||||||| |||||| |
|
|
| T |
2374779 |
ttatgctcttaatgcttaaatgcttgc-atcatattaatgt-ctagttacaacctcacattgaaaactgtaattgtgaa |
2374703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 2368521 - 2368461
Alignment:
| Q |
71 |
aactgtgaatatattaacttctaaaattttccaaatagacaaaaacaaagtccaacatcaac |
132 |
Q |
| |
|
|||||||| ||| ||||||||||||| ||| || ||||||||||||| | |||||||||||| |
|
|
| T |
2368521 |
aactgtgattattttaacttctaaaa-tttgcagatagacaaaaacatactccaacatcaac |
2368461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 2374144 - 2374103
Alignment:
| Q |
104 |
aatagacaaaaacaaagtccaacatcaactcattccgataga |
145 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||| |||||| |
|
|
| T |
2374144 |
aatagacaaaaacatactccaacatcaactcattctgataga |
2374103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University