View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3276_high_3 (Length: 502)
Name: NF3276_high_3
Description: NF3276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3276_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Original strand, 2572342 - 2572846
Alignment:
| Q |
1 |
tttgaggtaatggtagttaggcatagttaggcaactgccatattttttcctactataaataccagaaagtttcgttgaatatcatgcagacttagaaact |
100 |
Q |
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| T |
2572342 |
tttgaggtaatggtagttaggcatagttaggcaactgccatattttttcctactataaataccagaaagtttagttgaatatcatgcagacttagaaact |
2572441 |
T |
|
| Q |
101 |
taatagaaccatcatgaggtgcagtttgttgatcaatagtttgatcttgttatttgtcatgggtagttggaatggattattagccataacggatgatgaa |
200 |
Q |
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| T |
2572442 |
taatagaaccatcatgaggtgcagtttgttgatcaatagtttgatcttgttatttgtcatgggtagttggaatggattattagccataacggatgatgaa |
2572541 |
T |
|
| Q |
201 |
ttcattagtacaaattcctcggctaattacgactatgcagatgctcttggcaaagccatcatgttttttgaaggacaacgctcaggaaagttgcctaagg |
300 |
Q |
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| T |
2572542 |
ttcattagtacaaattcctcggctaattacgactatgcagatgctcttggcaaagccatcttgttttttgaaggacaacgctcaggaaagttgcctaagg |
2572641 |
T |
|
| Q |
301 |
accaaagagtgaagtggaggggagactcggctctctctgatggcaagactcaaaatg----------tatatatatatgacatggcataaactttaacta |
390 |
Q |
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| T |
2572642 |
accaaagagtgaagtggaggggagactcggctctctctgatggcaagactcaaaatgtatataaatatatatatatatgacatggcataaactttaacta |
2572741 |
T |
|
| Q |
391 |
caattttgcactaggcccaatataactttatacaatgctctatatatgtgagtgttttttgatataaattctttatgaacaatcatgtgtattatatatt |
490 |
Q |
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| T |
2572742 |
caattttgcactaggcccaatataactttatacactgctctatatatgtgagtgttttttgatataaattctttacaaacaatcatgtgtattatatatt |
2572841 |
T |
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| Q |
491 |
cttgg |
495 |
Q |
| |
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|||| |
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| T |
2572842 |
tttgg |
2572846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 109 - 367
Target Start/End: Original strand, 2561919 - 2562180
Alignment:
| Q |
109 |
ccatcatgaggtgcagtttgttgatcaatagtttgatcttgttatttgtcatgggtagttggaat---ggattattagccataacggatgatgaattcat |
205 |
Q |
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|||||||| |||||||||||||||| | | |||| ||||||| |||| |||| ||||| |||| || ||||||| |||| |||||| ||||| || |
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| T |
2561919 |
ccatcatggggtgcagtttgttgataagtggtttaatcttgtggtttgccatgagtagtaagaataatggtatattagcaataatggatgaggaattaat |
2562018 |
T |
|
| Q |
206 |
tagtacaaattcctcggctaattacgactatgcagatgctcttggcaaagccatcatgttttttgaaggacaacgctcaggaaagttgcctaaggaccaa |
305 |
Q |
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| T |
2562019 |
tagtaaaagttcctcatcaagttacaactatgcagatgctcttggcaaagcaatcttgttttttgaaggacaacgctcagggaaattgcctaaagaccaa |
2562118 |
T |
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| Q |
306 |
agagtgaagtggaggggagactcggctctctctgatggcaagactcaaaatgtatatatata |
367 |
Q |
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|||||||||||||||||||| || || |||||||||||||| |||||||||||| ||||||| |
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| T |
2562119 |
agagtgaagtggaggggagattcagcactctctgatggcaaaactcaaaatgtacatatata |
2562180 |
T |
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