View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3276_high_30 (Length: 222)
Name: NF3276_high_30
Description: NF3276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3276_high_30 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 27016589 - 27016368
Alignment:
| Q |
1 |
atgaggctgggtccttgtcaccagaactgtttcatggtgatgaaaatgaggaagctattgaccctgaagaggacagagctctactggtaaaccttatttc |
100 |
Q |
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| T |
27016589 |
atgaggctgggtccttgtcaccagaactgtttcatggtgatgaaaatgaggaagctattgaccctgaagaggacagagctctactggtaaatcttatttc |
27016490 |
T |
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| Q |
101 |
acacttaatctaatgattttatttcacacttaagtatataggctaacttgtccacaatggaacattcacaggaacaaaaacgtttggctgtaaaggaaga |
200 |
Q |
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| T |
27016489 |
acacttaatctaatgatcttatttcacacttaagtatataggctaacttgtccacaatggtacattcacaggaacaaaaacgtttggctgtaaaggaaga |
27016390 |
T |
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| Q |
201 |
gcagcagagacgaattcaggaa |
222 |
Q |
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| T |
27016389 |
gcagcagagacgaattcaggaa |
27016368 |
T |
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Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 41673526 - 41673615
Alignment:
| Q |
1 |
atgaggctgggtccttgtcaccagaactgtttcatggtgatgaaaatgaggaagctattgaccctgaagaggacagagctctactggtaa |
90 |
Q |
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|||||||||| || || |||||| ||||||| |||| | |||||||||||||||||||||| ||||||||||||| |||| ||||||||| |
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| T |
41673526 |
atgaggctggatcattttcaccacaactgttgcatgataatgaaaatgaggaagctattgatcctgaagaggacaaagctatactggtaa |
41673615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 41673704 - 41673748
Alignment:
| Q |
178 |
aaacgtttggctgtaaaggaagagcagcagagacgaattcaggaa |
222 |
Q |
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| T |
41673704 |
aaacgtatggctgtaatggaagagcagcaaagacggattcaggaa |
41673748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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