View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3276_high_31 (Length: 218)

Name: NF3276_high_31
Description: NF3276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3276_high_31
NF3276_high_31
[»] chr8 (2 HSPs)
chr8 (18-204)||(34812926-34813113)
chr8 (138-192)||(39332586-39332640)
[»] chr4 (1 HSPs)
chr4 (18-90)||(5892866-5892938)
[»] chr3 (3 HSPs)
chr3 (18-89)||(28580403-28580474)
chr3 (29-89)||(28575354-28575414)
chr3 (30-89)||(28586547-28586606)
[»] chr6 (1 HSPs)
chr6 (18-89)||(24072023-24072094)
[»] scaffold1033 (1 HSPs)
scaffold1033 (18-89)||(3034-3110)
[»] scaffold1029 (1 HSPs)
scaffold1029 (18-89)||(3034-3110)
[»] chr1 (1 HSPs)
chr1 (137-189)||(17322705-17322757)


Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 34812926 - 34813113
Alignment:
Q  18 aatatctccacctataaacaccgaatcaagtctgttttattatcaaagcattaattttcagaatggttagtacctagtacttagtagtactacttgacta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34812926 aatatctccacctataaacaccgaatcaagtctgttttattatcaaagcattaattttcagaatggttagtacctagtacttagtagtactacttgacta 34813025  T
Q  118 taa-nnnnnnnnngaggtgaaccttggggagatccagttccatagagcggtttgcatagcccaaggtccggccctggcaggtagtgta 204  Q
    |||          ||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||| |||||||    
T  34813026 taattttttttttgaggtgaaccttggggagacccagttccatagagcggtttgcataccctaaggtccggccctggcagatagtgta 34813113  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 39332586 - 39332640
Alignment:
Q  138 ccttggggagatccagttccatagagcggtttgcatagcccaaggtccggccctg 192  Q
    |||||||||  ||||||||||| |||||||||||| | ||||||||||| |||||    
T  39332586 ccttggggatgtccagttccattgagcggtttgcacatcccaaggtccgaccctg 39332640  T

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Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 5892938 - 5892866
Alignment:
Q  18 aatatctccacctataaacaccgaatcaagtctgttttattatcaaagcattaattttcagaatggttagtac 90  Q
    ||||| |||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  5892938 aatatttccacctataaacaccaaatcaagtctgttttattatcagagcactaattttcagaatggttagtac 5892866  T

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Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 28580474 - 28580403
Alignment:
Q  18 aatatctccacctataaacaccgaatcaagtctgttttattatcaaagcattaattttcagaatggttagta 89  Q
    |||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  28580474 aatatccccagctataaacactgaatcaagtctgttttattatcaaagcattaatttccagaatggtaagta 28580403  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 28575414 - 28575354
Alignment:
Q  29 ctataaacaccgaatcaagtctgttttattatcaaagcattaattttcagaatggttagta 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||    
T  28575414 ctataaacaccgaatcaagtctgttttattatcaaagcattaatttctagaatggtaagta 28575354  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 28586606 - 28586547
Alignment:
Q  30 tataaacaccgaatcaagtctgttttattatcaaagcattaattttcagaatggttagta 89  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| ||||    
T  28586606 tataaacactgaatcaagtctgttttactatcaaagcattaatttccagaatggtaagta 28586547  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 24072094 - 24072023
Alignment:
Q  18 aatatctccacctataaacaccgaatcaagtctgttttattatcaaagcattaattttcagaatggttagta 89  Q
    |||||||||| |||||||||  ||||||||||||||||| ||||||||||||||||| ||||||||| ||||    
T  24072094 aatatctccaactataaacattgaatcaagtctgttttactatcaaagcattaatttccagaatggtaagta 24072023  T

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Target: scaffold1033 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 3034 - 3110
Alignment:
Q  18 aatatctccacctataaacaccgaatcaagtctgttttatt-----atcaaagcattaattttcagaatggttagta 89  Q
    |||||| ||| |||||||||| ||||||||||||||||| |     |||||||||||||||| ||||||||| ||||    
T  3034 aatatccccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagta 3110  T

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Target: scaffold1029 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 3034 - 3110
Alignment:
Q  18 aatatctccacctataaacaccgaatcaagtctgttttatt-----atcaaagcattaattttcagaatggttagta 89  Q
    |||||| ||| |||||||||| ||||||||||||||||| |     |||||||||||||||| ||||||||| ||||    
T  3034 aatatccccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagta 3110  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 17322705 - 17322757
Alignment:
Q  137 accttggggagatccagttccatagagcggtttgcatagcccaaggtccggcc 189  Q
    |||||||||||| || ||||||| |||||||||||| | || |||||||||||    
T  17322705 accttggggagaccccgttccattgagcggtttgcacaccctaaggtccggcc 17322757  T

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