View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3276_high_8 (Length: 399)

Name: NF3276_high_8
Description: NF3276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3276_high_8
NF3276_high_8
[»] chr2 (12 HSPs)
chr2 (97-399)||(44614858-44615144)
chr2 (1-182)||(44624013-44624196)
chr2 (17-102)||(39137894-39137979)
chr2 (15-98)||(39459274-39459357)
chr2 (1-36)||(44614822-44614857)
chr2 (15-77)||(39161864-39161926)
chr2 (15-77)||(39207268-39207330)
chr2 (1-98)||(39152583-39152680)
chr2 (1-77)||(39389096-39389172)
chr2 (136-179)||(39414622-39414665)
chr2 (98-149)||(39421698-39421749)
chr2 (1-98)||(39370116-39370213)
[»] chr8 (3 HSPs)
chr8 (1-149)||(45342058-45342206)
chr8 (141-182)||(45342230-45342271)
chr8 (314-351)||(45342640-45342677)
[»] chr6 (1 HSPs)
chr6 (1-77)||(16113307-16113383)
[»] chr7 (2 HSPs)
chr7 (147-179)||(19808027-19808059)
chr7 (24-102)||(19807851-19807929)
[»] chr5 (2 HSPs)
chr5 (141-179)||(17059656-17059694)
chr5 (106-147)||(17059589-17059630)


Alignment Details
Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 97 - 399
Target Start/End: Original strand, 44614858 - 44615144
Alignment:
Q  97 atttgatgaggaaaaagaatttggtaaatgttgctattcatctattttattgatgttgatatttttaataacctgatctacatatttnnnnnnnntaa-- 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||      
T  44614858 atttgatgaggaaaaagaatttggtaaatgttgctattcatctattttattgatgttgatatttttaataacctgatctacatatttaaaaaaaataaat 44614957  T
Q  195 --taatttaatgatgttaatgcagtacttgctattcaactattctatatcacacacataataatcctatttggagttttggatataatatttatcaacta 292  Q
      ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||| |||||||| ||||||||              
T  44614958 aataatttaatgatgttaatgcagtacttgcaattcaactattctatatcacacaaataatagtcctatttgtagttttggctataatat---------- 44615047  T
Q  293 aacactactccaataattcactaaggttctatattgactttgaaactgttagtataatgtttttctttctcacatgctttcatagtatatatctttttta 392  Q
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44615048 ----------caataattcactaaggttctatattgactttgaaactgttagtataatgtttttctttctcacatgctttcatagtatatatctttttta 44615137  T

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Target: chr2; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 44624013 - 44624196
Alignment:
Q  1 aaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagagaaacaattt 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||  |    
T  44624013 aaaagagaatcagattgaagtacaaatcaaggatcttaagtcaaagctgaataattttggtggacaaccaaaggagcttgagttgacagagaaacaacat 44624112  T
Q  101 gatgaggaaaaagaatttggtaaatgttgctattcatc--tattttattgatgttgatatttttaataacctgatctacatatt 182  Q
    ||||| ||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||| |||||| |||||    
T  44624113 gatgaagaaaaagaatttggtaaatgttgctattcatctttcttttattgatgttgatatttttaataaccagatctatatatt 44624196  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 39137894 - 39137979
Alignment:
Q  17 gaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagagaaacaatttga 102  Q
    |||| ||| |||||||||| ||  ||||||||| |||| |||| ||||||| | ||||||| ||| ||||||||||||||||||||    
T  39137894 gaaggacagatcaaggatcctggttcaaagctggataaatttgatggacaattgaaggagcctgaactgacagagaaacaatttga 39137979  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 39459274 - 39459357
Alignment:
Q  15 ttgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagagaaacaat 98  Q
    |||||| |||| |||||||||  ||||||||||| |||||||||| ||||||| | ||||||| |||  |||||| ||||||||    
T  39459274 ttgaaggacaagtcaaggatccagagtcaaagcttaataattttgatggacaagtgaaggagcctgagttgacagtgaaacaat 39459357  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 44614822 - 44614857
Alignment:
Q  1 aaaagagaatcagattgaagtacaaatcaaggatct 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  44614822 aaaagagaatcagattgaagtacaaatcaaggatct 44614857  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 39161864 - 39161926
Alignment:
Q  15 ttgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagc 77  Q
    |||||| |||| ||||||||| | |||||||| ||||||| |||| |||||||||||||||||    
T  39161864 ttgaaggacaagtcaaggatcctaagtcaaagatgaataaatttgatggacaactaaaggagc 39161926  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 39207330 - 39207268
Alignment:
Q  15 ttgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagc 77  Q
    |||||| |||| ||||||||| | |||||||| ||||||| |||| |||||||||||||||||    
T  39207330 ttgaaggacaagtcaaggatcctaagtcaaagatgaataaatttgatggacaactaaaggagc 39207268  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 39152583 - 39152680
Alignment:
Q  1 aaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagagaaacaat 98  Q
    ||||||||| ||| |||||||| ||  ||||||||||||||||||||| |||||   || ||||||    ||||||| |||| |||||||||||||||    
T  39152583 aaaagagaagcagcttgaagtagaagccaaggatcttgagtcaaagctaaataaacatgatggacagtcgaaggagcatgatttgacagagaaacaat 39152680  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 39389172 - 39389096
Alignment:
Q  1 aaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagc 77  Q
    |||||| || ||| ||||||  ||| |||| |||| |||||||||||||||||| |||| ||||||| |||||||||    
T  39389172 aaaagaaaagcagtttgaagggcaagtcaacgatcctgagtcaaagctgaataaatttgatggacaaataaaggagc 39389096  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 39414665 - 39414622
Alignment:
Q  136 atctattttattgatgttgatatttttaataacctgatctacat 179  Q
    ||||| |||| ||||||||||||||||||||| |||||||||||    
T  39414665 atctagtttaatgatgttgatatttttaataatctgatctacat 39414622  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 39421749 - 39421698
Alignment:
Q  98 tttgatgaggaaaaagaatttggtaaatgttgctattcatctattttattga 149  Q
    |||||||||||||| |||| |||||||||||  |||||||||| ||||||||    
T  39421749 tttgatgaggaaaatgaatctggtaaatgttcttattcatctaatttattga 39421698  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 39370116 - 39370213
Alignment:
Q  1 aaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagagaaacaat 98  Q
    ||||||||| ||| ||| |  |||| |||||| ||||||||||||| ||||||| || | ||||||||||||| ||| |||   |||| |||||||||    
T  39370116 aaaagagaagcagtttggaagacaagtcaagggtcttgagtcaaagatgaataaattggatggacaactaaagaagcctgagtcgacaaagaaacaat 39370213  T

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Target: chr8 (Bit Score: 89; Significance: 9e-43; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 45342058 - 45342206
Alignment:
Q  1 aaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagagaaacaattt 100  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| | ||||||| |||||||||||||  ||||| |||||||||      
T  45342058 aaaagagaatcagtttgaagtgcaaatcaaggaccttgagtcaaagctgaataatttggatggacaaataaaggagcttgagttgacaaagaaacaatac 45342157  T
Q  101 gatgaggaaaaagaatttggtaaatgttgctattcatctattttattga 149  Q
    ||||||||||||||||||||||||  ||| |||||||||| ||||||||    
T  45342158 gatgaggaaaaagaatttggtaaaatttgttattcatctagtttattga 45342206  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 45342230 - 45342271
Alignment:
Q  141 ttttattgatgttgatatttttaataacctgatctacatatt 182  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  45342230 ttttgttgatgttgatatttttaataacctgatctacatatt 45342271  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 351
Target Start/End: Original strand, 45342640 - 45342677
Alignment:
Q  314 taaggttctatattgactttgaaactgttagtataatg 351  Q
    ||||||||||||||||||||| || |||||||||||||    
T  45342640 taaggttctatattgactttgtaattgttagtataatg 45342677  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 16113307 - 16113383
Alignment:
Q  1 aaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagc 77  Q
    ||||||||| ||||||||||||||| ||||||| |||||||||||||||||  | ||||| |||||||| |||||||    
T  16113307 aaaagagaagcagattgaagtacaagtcaaggagcttgagtcaaagctgaacgaatttggcggacaactgaaggagc 16113383  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 19808027 - 19808059
Alignment:
Q  147 tgatgttgatatttttaataacctgatctacat 179  Q
    |||||||||||||||||||||||||||||||||    
T  19808027 tgatgttgatatttttaataacctgatctacat 19808059  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 19807851 - 19807929
Alignment:
Q  24 aaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagagaaacaatttga 102  Q
    |||||||||||| ||  ||||||||| |||| |||| ||||||| | ||||||  |||  |||||||||||||||||||    
T  19807851 aaatcaaggatcctggttcaaagctggataaatttgatggacaattgaaggagtctgagttgacagagaaacaatttga 19807929  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 179
Target Start/End: Original strand, 17059656 - 17059694
Alignment:
Q  141 ttttattgatgttgatatttttaataacctgatctacat 179  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  17059656 ttttattgatgttgctatttttaatatcctgatctacat 17059694  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 17059589 - 17059630
Alignment:
Q  106 ggaaaaagaatttggtaaatgttgctattcatctattttatt 147  Q
    |||||| ||||||||||||||||| |||||||||| ||||||    
T  17059589 ggaaaatgaatttggtaaatgttgttattcatctagtttatt 17059630  T

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