View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3276_high_9 (Length: 371)
Name: NF3276_high_9
Description: NF3276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3276_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 30848654 - 30848300
Alignment:
| Q |
1 |
tgaaaaggataagttcattcatgaaataaattaatctgcatttttgcatgtattagagacaaccatattagtatatttatgctcatgcatannnnnnnnn |
100 |
Q |
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| T |
30848654 |
tgaaaaggataagttcattcatgaaataaattaatctgcatttttgcatgtattagagacaaccatattagtatatttatgctcatgcatattttttttt |
30848555 |
T |
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| Q |
101 |
gaaactagaacagaattaactttcacctccaaaatatttgtccatggtatatattattctgtattccttcaagtctaggagataaaagttaataagatat |
200 |
Q |
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| T |
30848554 |
gaaactagaacagaattaactttcacctccaaaatatttgtccatagtatatattattctgtattccttcaagtctaggagataaaagttaataagatat |
30848455 |
T |
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| Q |
201 |
aggtgtgtaatgaagctgtcaatattctatgatgataatatattgtcgaagaattactttcaattctttgatagaccatttaatcaaattagttttcacc |
300 |
Q |
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| T |
30848454 |
aggtgtgtaatgaagctgtcaatattctatgatgataatatattgtcgaagaattactttcaattctttgatagaccatttaatcaaattagttttcacc |
30848355 |
T |
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| Q |
301 |
tttcaaatcagtttccattaggaatttgatgcaagcatgcatgtatatataaata |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30848354 |
tttcaaatcagtttccattaggaatttgatgcaagcatgcatgtatatataaata |
30848300 |
T |
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