View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3276_low_10 (Length: 355)
Name: NF3276_low_10
Description: NF3276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3276_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 12124059 - 12124401
Alignment:
| Q |
1 |
ctccgaaatttgcaaataaacaaaaatatacacaaggcaaaacacgtcagttatttgtgtatgacagatgaaggaaaataaccgataatttaattttgta |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
12124059 |
ctccaaaatttgcaaataaacaaaaatatacacaaggcaaaatacgtcagttatttgtgtatgacagatgaaggaaaataaccgatgatttaattttgta |
12124158 |
T |
|
| Q |
101 |
agtactaatttggtgaaactaaaattatataaaactccaactatcactatgcatcattgccatcgtcatcgctggagtgatcactgtcgttgtcaatatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12124159 |
ggtactaatttggtgaaactaaaattatataaaactccaactatcactatgcatcattgccatcgtcatcgctggagcgatcactgtcgttgtcaatatc |
12124258 |
T |
|
| Q |
201 |
actgtaaatgtcatagtcactatcattattgctgtcactgccgctgtcgctgtctgcctcatccatcgaaatcatgtctttcgtgatgacctcttcaaga |
300 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12124259 |
actgtaaatgtcaatgtcactatcattattgctgtcactgccgctgtcgctgtctgcctcatccatcgaaatcatgtctttcgtgatcacctcttcaaga |
12124358 |
T |
|
| Q |
301 |
agcttacagttcttgaagagatacgtaatgaattggcgatatt |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12124359 |
agcttacagttcttgaagagatacgtaatgaattggcgatatt |
12124401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 221 - 343
Target Start/End: Original strand, 12126332 - 12126454
Alignment:
| Q |
221 |
tatcattattgctgtcactgccgctgtcgctgtctgcctcatccatcgaaatcatgtctttcgtgatgacctcttcaagaagcttacagttcttgaagag |
320 |
Q |
| |
|
||||| ||| ||||||||||| || |||||| |||||||||||||| |||||| ||| ||| ||||||||||| ||||||| |||||||||||||| || |
|
|
| T |
12126332 |
tatcactatcgctgtcactgctgccgtcgctatctgcctcatccatgaaaatcaagtcattcatgatgacctctacaagaaggttacagttcttgaacag |
12126431 |
T |
|
| Q |
321 |
atacgtaatgaattggcgatatt |
343 |
Q |
| |
|
|||| |||| ||||||||||||| |
|
|
| T |
12126432 |
atacttaataaattggcgatatt |
12126454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 69 - 203
Target Start/End: Original strand, 12126131 - 12126265
Alignment:
| Q |
69 |
tgaaggaaaataaccgataatttaattttgtaagtactaatttggtgaaactaaaattatataaaactccaactatcactatgcatcattgccatcgtca |
168 |
Q |
| |
|
|||| ||||||||||||| |||| ||||| |||||||| || ||||||||||||| |||||||||| ||||||||||||||||||| ||||| |||| |
|
|
| T |
12126131 |
tgaaagaaaataaccgatgttttacaattgtaggtactaatctgatgaaactaaaattttataaaactcaaactatcactatgcatcatcgccattgtca |
12126230 |
T |
|
| Q |
169 |
tcgctggagtgatcactgtcgttgtcaatatcact |
203 |
Q |
| |
|
||||| ||| |||| |||| |||||| ||||||| |
|
|
| T |
12126231 |
tcgctagagcgatcgttgtcattgtcactatcact |
12126265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 2373814 - 2373735
Alignment:
| Q |
244 |
ctgtcgctgtctgcctcatccatcgaaatcatgtctttcgtgatgacctcttcaagaagcttacagttcttgaagagata |
323 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||| ||| ||| ||||||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
2373814 |
ctgtcactgtcagcctcatccatggaaatcaagtcattcatgatgacctcttcaagaaggttacaatttttgaagagata |
2373735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 2368366 - 2368320
Alignment:
| Q |
96 |
ttgtaagtactaatttggtgaaactaaaattatataaaactccaact |
142 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
2368366 |
ttgtaagtactaatttagtgaaactaaaattatataaaattccaact |
2368320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 2373957 - 2373901
Alignment:
| Q |
102 |
gtactaatttggtgaaactaaaattatataaaa-ctccaactatcactatgcatcat |
157 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| ||||||||| ||||||||||||| |
|
|
| T |
2373957 |
gtactaatttggcaaaactaaaattataaaaaaactccaactaccactatgcatcat |
2373901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 323
Target Start/End: Complemental strand, 2368245 - 2368172
Alignment:
| Q |
250 |
ctgtctgcctcatccatcgaaatcatgtctttcgtgatgacctcttcaagaagcttacagttcttgaagagata |
323 |
Q |
| |
|
|||||| |||||||| ||||||| ||| ||| |||||||||||| ||||| | |||||||||||||||||| |
|
|
| T |
2368245 |
ctgtctacctcatcctcggaaatcaagtcattcatgatgacctctttcagaaggtcacagttcttgaagagata |
2368172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University