View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3276_low_11 (Length: 353)
Name: NF3276_low_11
Description: NF3276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3276_low_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 27016810 - 27017163
Alignment:
| Q |
1 |
agcatcttccaatttatcttcaccctctgatggtttcttaaggcgtagcaaatgcttgcgtaacattttggcatgaatttcctttaaacaagcctgtatt |
100 |
Q |
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| T |
27016810 |
agcatcttccaatttatcttcaccctctaatggtttcttaaggcgtagcaaatgcttgcgtaacattttggcatggatttcctttaaacaagcctgtatt |
27016909 |
T |
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| Q |
101 |
gcagcaaataatggagcgaacaatccattaagttatggcatgtaacagaaaatacnnnnnnnnn-tgttagagagattaccttggctttatatatgcgga |
199 |
Q |
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| T |
27016910 |
gcagcaaataatggagcgaacaatccattaagttatggcatgtaacataaaatacaaaaaaaaaatgttagagagattaccttggctttatatatgcgga |
27017009 |
T |
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| Q |
200 |
ggtactttaaaacagtctcccagtactcaacaagctttgctgcaccagtacgcatttctgactcaatatgcgcctgcaaagcttccaattctgcatgtgt |
299 |
Q |
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| T |
27017010 |
ggtactttaaaacagtctcccagtactcaacaagctttgctgcaccagtacgcatttctgactcaatatgcgcctgcaaagcttccaattctgcatgtgt |
27017109 |
T |
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| Q |
300 |
cttcccctgcaaaagcttcttcacatctggttcaacactgttatgcagacctct |
353 |
Q |
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| T |
27017110 |
cttcccctgcaaaagcttcttcacatctggttcaacactgttatgcagacctct |
27017163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 177 - 350
Target Start/End: Complemental strand, 41673124 - 41672951
Alignment:
| Q |
177 |
taccttggctttatatatgcggaggtactttaaaacagtctcccagtactcaacaagctttgctgcaccagtacgcatttctgactcaatatgcgcctgc |
276 |
Q |
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| T |
41673124 |
taccttggccttgtatatgtggaggtgttttaaaatggcctcccagtactcaaccacctttgctgtaccagtacgcatctctgactcaatgtgagcctgt |
41673025 |
T |
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| Q |
277 |
aaagcttccaattctgcatgtgtcttcccctgcaaaagcttcttcacatctggttcaacactgttatgcagacc |
350 |
Q |
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| T |
41673024 |
aaggcttccaactctgtacgtgtctttccatgtaaaaggtccttcacatctggctcaacactggaatgcagacc |
41672951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 41673290 - 41673203
Alignment:
| Q |
13 |
tttatcttcaccctctgatggtttcttaaggcgtagcaaatgcttgcgtaacattttggcatgaatttcctttaaacaagcctgtatt |
100 |
Q |
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| T |
41673290 |
tttatcttcatcctccaatggttgctcaagacgttgcaaatgcttacgtaacattttagcatggatctcctttaaacaagcctatatt |
41673203 |
T |
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