View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3276_low_16 (Length: 309)

Name: NF3276_low_16
Description: NF3276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3276_low_16
NF3276_low_16
[»] chr1 (2 HSPs)
chr1 (20-221)||(26278309-26278505)
chr1 (247-309)||(26278560-26278622)
[»] chr3 (4 HSPs)
chr3 (247-300)||(25239614-25239667)
chr3 (27-126)||(25239797-25239896)
chr3 (247-300)||(27404186-27404239)
chr3 (27-111)||(33426954-33427041)
[»] chr4 (4 HSPs)
chr4 (26-109)||(8351861-8351944)
chr4 (75-168)||(51353063-51353159)
chr4 (60-120)||(41969466-41969526)
chr4 (33-117)||(41969271-41969355)
[»] chr8 (1 HSPs)
chr8 (26-109)||(26172234-26172317)
[»] chr7 (3 HSPs)
chr7 (247-300)||(35480106-35480159)
chr7 (68-104)||(35479898-35479934)
chr7 (26-111)||(16781368-16781453)
[»] chr5 (4 HSPs)
chr5 (247-300)||(18884762-18884815)
chr5 (27-108)||(1817751-1817832)
chr5 (60-99)||(23218121-23218160)
chr5 (58-103)||(1817950-1817995)
[»] chr2 (2 HSPs)
chr2 (27-104)||(534044-534121)
chr2 (59-120)||(31627207-31627268)


Alignment Details
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 26278309 - 26278505
Alignment:
Q  20 atggaggcatttcatcaaa-catttagaatgcaaaatatacattatgagttcattttgttatttcaatttctaaactaccacattgcacttaatcttact 118  Q
    ||||||||||||||||||| ||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26278309 atggaggcatttcatcaaaacatttagaatgcaaaatatacatt--gagtttattttgttatttcaatttctaaactaccacattgcacttaatcttact 26278406  T
Q  119 cttattaacggtcagagttcaaacatgtaagcatttgatcattaactaccnnnnnnnctgacaatttcataaaccctaaaaactaacacatgacaacttt 218  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||| ||       |||||||||||||||||||||||||||||||||||||||||||    
T  26278407 cttattaacagtcacagttcaaacatgtaagcatttgatcattaactgcc----aaactgacaatttcataaaccctaaaaactaacacatgacaacttt 26278502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 247 - 309
Target Start/End: Original strand, 26278560 - 26278622
Alignment:
Q  247 ttacttgtagttgaggttaaagttgaacttgatttgcttgaagttgaagaaatttgattagct 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26278560 ttacttgtagttgaggttaaagttgaacttgatttgcttgaagttgaagaaatttgattagct 26278622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 25239667 - 25239614
Alignment:
Q  247 ttacttgtagttgaggttaaagttgaacttgatttgcttgaagttgaagaaatt 300  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25239667 ttacttgtagttgaggttgaagttgaacttgatttgcttgaagttgaagaaatt 25239614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 25239896 - 25239797
Alignment:
Q  27 catttcatcaaacatttagaatgcaaaatatacattatgagttcattttgttatttcaatttctaaactaccacattgcacttaatcttactcttattaa 126  Q
    ||||| |||||||| || || | ||| | ||| |||||||||||||| |||||||||||| ||||||||||||||||||||| || |||||||| |||||    
T  25239896 cattttatcaaacacttggagttcaacaaatatattatgagttcattgtgttatttcaatctctaaactaccacattgcactcaaacttactctaattaa 25239797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 27404239 - 27404186
Alignment:
Q  247 ttacttgtagttgaggttaaagttgaacttgatttgcttgaagttgaagaaatt 300  Q
    |||||||||||||||||  ||||| || |||||||| |||||||||| ||||||    
T  27404239 ttacttgtagttgaggtagaagttcaagttgatttgtttgaagttgaggaaatt 27404186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 33426954 - 33427041
Alignment:
Q  27 catttcatcaaacatttagaatgcaaaatatacattatgagttcattttgttatttca---atttctaaactaccacattgcacttaa 111  Q
    |||||||||||||| ||||||  ||||||||||||  |  | ||||| ||||||||||   |||| ||||||||||||||||| ||||    
T  33426954 catttcatcaaacacttagaacacaaaatatacatactttgatcattgtgttatttcaattatttttaaactaccacattgcatttaa 33427041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 8351861 - 8351944
Alignment:
Q  26 gcatttcatcaaacatttagaatgcaaaatatacattatgagttcattttgttatttcaatttctaaactaccacattgcactt 109  Q
    |||||||||||||||  |  | ||| |||||||||||||||||||||| ||||||||||| || ||||||||||||||| ||||    
T  8351861 gcatttcatcaaacacatgtagtgctaaatatacattatgagttcattgtgttatttcaagttttaaactaccacattgaactt 8351944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 168
Target Start/End: Complemental strand, 51353159 - 51353063
Alignment:
Q  75 tgttatttcaatttctaaactaccacattgcacttaatcttactc---ttattaacggtcagagttcaaacatgtaagcatttgatcattaactacc 168  Q
    |||||||||||||| ||||||| |||||||||||| |||||||||   | || | |  |||  ||||||||| | ||||||||||||||||||||||    
T  51353159 tgttatttcaatttataaactatcacattgcacttgatcttactctaatcatcatcattcattgttcaaacaagcaagcatttgatcattaactacc 51353063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 41969466 - 41969526
Alignment:
Q  60 attatgagttcattttgttatttcaatttctaaactaccacattgcacttaatcttactct 120  Q
    |||||||||| ||| ||| |||||||| |||||||||||| ||||||| ||| ||||||||    
T  41969466 attatgagtttattgtgtcatttcaatctctaaactaccatattgcacataaacttactct 41969526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 117
Target Start/End: Original strand, 41969271 - 41969355
Alignment:
Q  33 atcaaacatttagaatgcaaaatatacattatgagttcattttgttatttcaatttctaaactaccacattgcacttaatcttac 117  Q
    ||||||||  ||||||  || ||| ||||||| ||| |||| ||| |||||||| ||||||||||| ||||||||| || |||||    
T  41969271 atcaaacacctagaattaaacataaacattattagtacattatgtcatttcaatctctaaactacctcattgcactcaaacttac 41969355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 26172234 - 26172317
Alignment:
Q  26 gcatttcatcaaacatttagaatgcaaaatatacattatgagttcattttgttatttcaatttctaaactaccacattgcactt 109  Q
    ||||||||||||||| || || ||| ||||||||||| | |||||||| | ||||||||| || ||||||||||||||| ||||    
T  26172234 gcatttcatcaaacacttggagtgctaaatatacattcttagttcattgtattatttcaagttttaaactaccacattgaactt 26172317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 35480106 - 35480159
Alignment:
Q  247 ttacttgtagttgaggttaaagttgaacttgatttgcttgaagttgaagaaatt 300  Q
    |||||||||||||||||| || |||||| ||||||| |||||||||||||||||    
T  35480106 ttacttgtagttgaggttgaaattgaacatgatttgtttgaagttgaagaaatt 35480159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 35479898 - 35479934
Alignment:
Q  68 ttcattttgttatttcaatttctaaactaccacattg 104  Q
    |||||| ||||||||||||||||||||||||||||||    
T  35479898 ttcattatgttatttcaatttctaaactaccacattg 35479934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 16781453 - 16781368
Alignment:
Q  26 gcatttcatcaaacatttagaatgcaaaatatacattatgagttcattttgttatttcaatttctaaactaccacattgcacttaa 111  Q
    ||||||||||||||| || || ||||||||||| | | |   |||||| ||||||||||| || ||||||| ||||||| ||||||    
T  16781453 gcatttcatcaaacactttgagtgcaaaatatataatctctattcattgtgttatttcaacttttaaactatcacattgaacttaa 16781368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 18884762 - 18884815
Alignment:
Q  247 ttacttgtagttgaggttaaagttgaacttgatttgcttgaagttgaagaaatt 300  Q
    |||||||| ||||| ||| ||||||||||||||| |||||||||||||||||||    
T  18884762 ttacttgtggttgaagttgaagttgaacttgattggcttgaagttgaagaaatt 18884815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 1817751 - 1817832
Alignment:
Q  27 catttcatcaaacatttagaatgcaaaatatacattatgagttcattttgttatttcaatttctaaactaccacattgcact 108  Q
    ||||| ||||||||| |||| | ||| ||| ||||||||||| |||| ||| |||| ||| ||||||||| |||||||||||    
T  1817751 cattttatcaaacatctagagttcaacataaacattatgagtacattgtgtcatttgaatctctaaactatcacattgcact 1817832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 23218121 - 23218160
Alignment:
Q  60 attatgagttcattttgttatttcaatttctaaactacca 99  Q
    |||||||||||||| |||||||||||| ||||||||||||    
T  23218121 attatgagttcattgtgttatttcaatctctaaactacca 23218160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 1817950 - 1817995
Alignment:
Q  58 acattatgagttcattttgttatttcaatttctaaactaccacatt 103  Q
    |||||||||||||||| ||  |||||||| ||||||||||||||||    
T  1817950 acattatgagttcattgtgccatttcaatctctaaactaccacatt 1817995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 534121 - 534044
Alignment:
Q  27 catttcatcaaacatttagaatgcaaaatatacattatgagttcattttgttatttcaatttctaaactaccacattg 104  Q
    |||||||||||||| || || ||||||||||||||| | | || ||| | |||||||||||| ||||| |||||||||    
T  534121 catttcatcaaacacttggagtgcaaaatatacattcttaattgattgtattatttcaatttttaaaccaccacattg 534044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 31627268 - 31627207
Alignment:
Q  59 cattatgagttcattttgttatttcaatttctaaactaccacattgcacttaatcttactct 120  Q
    ||||||||||| ||| ||| |||||||| |||||||||||||||| |||| || ||||||||    
T  31627268 cattatgagtttattgtgtcatttcaatctctaaactaccacattacactcaaacttactct 31627207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University