View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3276_low_20 (Length: 271)
Name: NF3276_low_20
Description: NF3276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3276_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 13370454 - 13370537
Alignment:
| Q |
171 |
gctgcctctatattcaaaacaaatgacctcgcgttctcttctcgaccggcatttgcatttgcagacagacttccttatggcact |
254 |
Q |
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| T |
13370454 |
gctgcctctatattcaaaacaaatgacctcgcgttctcttctcgaccggcatttacatttgcagacagacttccttatggcact |
13370537 |
T |
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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 105
Target Start/End: Original strand, 13370349 - 13370388
Alignment:
| Q |
66 |
tctctctacaaatccttccaatccatctcctcaaaacacg |
105 |
Q |
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| T |
13370349 |
tctctctacaaatccttccaatccatctcctcaaaacacg |
13370388 |
T |
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