View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3276_low_21 (Length: 269)
Name: NF3276_low_21
Description: NF3276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3276_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 15 - 255
Target Start/End: Original strand, 2271978 - 2272221
Alignment:
| Q |
15 |
gagaggtttgaatccatgtttaagagctgaaggccaaactttgtccatgttaatcatgttgtagccacactcatgttcattccattcttctaagcagtgc |
114 |
Q |
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| T |
2271978 |
gagaggtttgaatccatgtttaagagctgaaggccaaactttgtccatgttaatcatgttgtagccacactcatgttcattccattcttctaagcagtgc |
2272077 |
T |
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| Q |
115 |
actatcccagctacacgccatgcactcattaccctccttggcaaccaatcctgcaatttgttatgtttcctaattttatcattcatgcataaaatgagat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
2272078 |
actatcccagctacacgccatgcactcattaccctccttggcaaccaatcctgcaatttgttatgtttcccaattttatcattgatgcataaaatgagat |
2272177 |
T |
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| Q |
215 |
a---ttgtttataatcacaaaagtggtgcaactcgatcaagtga |
255 |
Q |
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| T |
2272178 |
atttttgtttataatcacaaaagtggtgcaagtcgatcaagtga |
2272221 |
T |
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