View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3276_low_35 (Length: 207)
Name: NF3276_low_35
Description: NF3276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3276_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 4e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 16003614 - 16003793
Alignment:
| Q |
9 |
gaggagcagagaaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaatatttgatcaacaataaaggtctttaattttcagaattgga |
108 |
Q |
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| T |
16003614 |
gaggaacacagaaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattgaa |
16003713 |
T |
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| Q |
109 |
aggaaatcaatataaaatctaaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttttggtggtaag |
188 |
Q |
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| T |
16003714 |
aggaaatcaatataaaatctaaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttatggtggtaag |
16003793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 26795005 - 26795172
Alignment:
| Q |
20 |
aaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaatatttgatcaacaataaaggtctttaattttcagaattggaaggaaatcaat |
119 |
Q |
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| T |
26795005 |
aaatagcggtatgactcgacttgtggaggaaaacggaactagggtgaatatttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaat |
26795104 |
T |
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| Q |
120 |
ataaaatctaaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttttggtggtaa |
187 |
Q |
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| T |
26795105 |
atagaatctaaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttatggtggtaa |
26795172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 40721968 - 40722137
Alignment:
| Q |
19 |
gaaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaatatttgatcaacaataaaggtctttaattttcagaattggaaggaaatcaa |
118 |
Q |
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| T |
40721968 |
gaaatagcggtatgactcgacttgtcgtggaaaacgaaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaa |
40722067 |
T |
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| Q |
119 |
tataaaatctaaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttttggtggtaag |
188 |
Q |
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| T |
40722068 |
tataaaatctaaaactacctctattttgtgatggatcttgcaagaacataaccatgtttatggtggtaag |
40722137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 70 - 188
Target Start/End: Complemental strand, 27222063 - 27221945
Alignment:
| Q |
70 |
tttgatcaacaataaaggtctttaattttcagaattggaaggaaatcaatataaaatctaaaactacctctattttgtgatggatcttgcaagaacagaa |
169 |
Q |
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| T |
27222063 |
tttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaatatagaatctaaaactacctctattttgtgatggatcttgcaagaacagaa |
27221964 |
T |
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| Q |
170 |
ccatgtttttggtggtaag |
188 |
Q |
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|||| ||| |||||||||| |
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| T |
27221963 |
ccatatttatggtggtaag |
27221945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 27222873 - 27222822
Alignment:
| Q |
18 |
agaaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaata |
69 |
Q |
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| T |
27222873 |
agaaatagcagtatgactcgacttgtggaggaaaacggaaccagggtgaata |
27222822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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