View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3276_low_4 (Length: 459)

Name: NF3276_low_4
Description: NF3276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3276_low_4
NF3276_low_4
[»] chr6 (1 HSPs)
chr6 (1-443)||(4912215-4912657)
[»] scaffold0010 (1 HSPs)
scaffold0010 (56-149)||(166763-166854)
[»] chr5 (9 HSPs)
chr5 (220-278)||(16869944-16870002)
chr5 (79-149)||(2942093-2942161)
chr5 (220-274)||(1621548-1621602)
chr5 (220-278)||(15596736-15596794)
chr5 (237-275)||(35766660-35766698)
chr5 (229-278)||(6462402-6462451)
chr5 (79-143)||(34640209-34640271)
chr5 (229-269)||(15006594-15006634)
chr5 (226-278)||(41892908-41892960)
[»] chr1 (10 HSPs)
chr1 (220-278)||(38322111-38322169)
chr1 (108-192)||(3949639-3949726)
chr1 (226-278)||(20003997-20004049)
chr1 (220-275)||(31117727-31117782)
chr1 (108-189)||(35058666-35058750)
chr1 (239-275)||(10517924-10517960)
chr1 (220-275)||(22593638-22593694)
chr1 (113-149)||(23908829-23908865)
chr1 (79-146)||(32602967-32603032)
chr1 (239-275)||(48817223-48817259)
[»] chr4 (9 HSPs)
chr4 (89-192)||(2103182-2103285)
chr4 (220-269)||(20988812-20988861)
chr4 (108-149)||(39276537-39276578)
chr4 (226-278)||(3535188-3535240)
chr4 (220-275)||(24418237-24418292)
chr4 (220-278)||(26026698-26026756)
chr4 (237-278)||(50792376-50792417)
chr4 (226-278)||(44555710-44555762)
chr4 (236-272)||(50570371-50570407)
[»] chr8 (3 HSPs)
chr8 (382-435)||(14354639-14354692)
chr8 (229-278)||(18892296-18892345)
chr8 (125-192)||(8407565-8407635)
[»] chr3 (7 HSPs)
chr3 (229-278)||(38684772-38684821)
chr3 (226-278)||(37083867-37083919)
chr3 (160-199)||(53023957-53023996)
chr3 (236-278)||(36879061-36879103)
chr3 (108-149)||(44560338-44560379)
chr3 (217-266)||(54399453-54399502)
chr3 (226-278)||(32326151-32326203)
[»] chr2 (3 HSPs)
chr2 (219-278)||(8752486-8752545)
chr2 (239-278)||(36602694-36602733)
chr2 (323-359)||(8752426-8752462)
[»] scaffold0009 (1 HSPs)
scaffold0009 (237-278)||(94364-94405)
[»] chr7 (3 HSPs)
chr7 (237-278)||(33982275-33982316)
chr7 (237-278)||(38224723-38224764)
chr7 (108-149)||(43911104-43911145)


Alignment Details
Target: chr6 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 4912657 - 4912215
Alignment:
Q  1 aagaagtgaactagaaaattgatgaaaagatgactgaggtactgtttggttgaaaatagtggatagttgatcaactatcttatagcggatagcaaataag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4912657 aagaagtgaactagaaaattgatgaaaagatgactgaggtactgtttggttgaaaatagtggatagttgatcaactatcttatagcggaaagcaaataag 4912558  T
Q  101 ctagctttgattgaatttgtagtttttggtgaaattagtggttgaactacatgataaataaatgacattaaaaagatatgtttaattaatatatttttct 200  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4912557 ctagctttgattgaatttgtagtttttggtaaaattagtggttgaactacatgataaataaatgacattaaaaagatatgtttacttaatatatttttct 4912458  T
Q  201 tcgattaagttggcaggggaaaaattgataagatataagctacttgaagtagtttatcaaaaaatgctataagctagtnnnnnnntggatataagcttgg 300  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  4912457 tcgattaagttgacaggggaaaaattgataagatataagctacttgaagtagtttatcaaaaaatgctataagctagtaaaaaaatggatataagcttgg 4912358  T
Q  301 gagaaaaatccttactagacaagtctagtttggtcatatgagcttataggctcaaaattttgtcttgcagaatagattctaagggtccgtttgccaagca 400  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4912357 gagaaaaatccttaccagacaagtctagtttggtcatatgagcttataggctcaaaattttgtcttgcagaatagattctaagggtccgtttgccaagca 4912258  T
Q  401 caataatttagcttatagcttataagctcatatgaatagaaag 443  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  4912257 caataatttagcttatagcttataagttcatatgaatagaaag 4912215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 149
Target Start/End: Complemental strand, 166854 - 166763
Alignment:
Q  56 atagtggatagttgatcaactatcttatagcggatagcaaataagctagctttgattgaatttgtagtttttggtgaaattagtggttgaacta 149  Q
    |||| |||||| |||| | ||| ||| ||||  ||||||||||||||||||  ||||||||||||||| |||||| ||||||| ||||||||||    
T  166854 atagcggatagatgataatctagcttgtagcttatagcaaataagctagct--gattgaatttgtagtgtttggtaaaattagcggttgaacta 166763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 220 - 278
Target Start/End: Original strand, 16869944 - 16870002
Alignment:
Q  220 aaaaattgataagatataagctacttgaagtagtttatcaaaaaatgctataagctagt 278  Q
    ||||| ||||||| ||||||||||||||| ||| ||||||||||| |||||||||||||    
T  16869944 aaaaaatgataagctataagctacttgaattagcttatcaaaaaacgctataagctagt 16870002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 2942161 - 2942093
Alignment:
Q  79 cttatagcggatagcaaataagctagctttgattgaatttgtagtttttggtgaaattagtggttgaacta 149  Q
    |||||||| ||||||  |||||||||  ||| ||||||||||||  |||||| ||||||||||||||||||    
T  2942161 cttatagctgatagcggataagctag--ttggttgaatttgtagggtttggtaaaattagtggttgaacta 2942093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 1621548 - 1621602
Alignment:
Q  220 aaaaattgataagatataagctacttgaagtagtttatcaaaaaatgctataagc 274  Q
    ||||| ||||||| ||||||||||||||| ||| ||||||||||| |||| ||||    
T  1621548 aaaaactgataagctataagctacttgaattagcttatcaaaaaacgctaaaagc 1621602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 278
Target Start/End: Original strand, 15596736 - 15596794
Alignment:
Q  220 aaaaattgataagatataagctacttgaagtagtttatcaaaaaatgctataagctagt 278  Q
    ||||| ||||||| ||||||||||| ||||| | ||||| ||||||| |||||||||||    
T  15596736 aaaaaatgataagttataagctactggaagttgcttatccaaaaatgttataagctagt 15596794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 35766698 - 35766660
Alignment:
Q  237 aagctacttgaagtagtttatcaaaaaatgctataagct 275  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  35766698 aagctacttgaaatagtttttcaaaaaatgctataagct 35766660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 6462402 - 6462451
Alignment:
Q  229 taagatataagctacttgaagtagtttatcaaaaaatgctataagctagt 278  Q
    |||||||||||||||||||| ||| ||||||||||   ||||||||||||    
T  6462402 taagatataagctacttgaattagcttatcaaaaaccactataagctagt 6462451  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 34640271 - 34640209
Alignment:
Q  79 cttatagcggatagcaaataagctagctttgattgaatttgtagtttttggtgaaattagtggtt 143  Q
    |||||||| ||||||  ||||||||||||  |||||||||||| | |||||| ||||||||||||    
T  34640271 cttatagctgatagcggataagctagctt--attgaatttgtaatgtttggtaaaattagtggtt 34640209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 15006634 - 15006594
Alignment:
Q  229 taagatataagctacttgaagtagtttatcaaaaaatgcta 269  Q
    |||||||||| ||||||||||| ||||||| ||||||||||    
T  15006634 taagatataaactacttgaagtggtttatctaaaaatgcta 15006594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 41892908 - 41892960
Alignment:
Q  226 tgataagatataagctacttgaagtagtttatcaaaaaatgctataagctagt 278  Q
    ||||||| | ||||||||||||| ||| ||||||||| | |||||||||||||    
T  41892908 tgataagctgtaagctacttgaattagcttatcaaaacacgctataagctagt 41892960  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 220 - 278
Target Start/End: Original strand, 38322111 - 38322169
Alignment:
Q  220 aaaaattgataagatataagctacttgaagtagtttatcaaaaaatgctataagctagt 278  Q
    ||||||||||||| ||||||||||||||||| | ||||||||||| || ||||||||||    
T  38322111 aaaaattgataagctataagctacttgaagtggcttatcaaaaaacgcaataagctagt 38322169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 3949639 - 3949726
Alignment:
Q  108 tgattgaatttgtagtttttggtgaaattagtggttgaactacatgataaat---aaatgacattaaaaagatatgtttaattaatat 192  Q
    |||||||||||||||| |||||| ||||||| | ||||||||  | ||||||   ||||||||| ||||||||||||||| |||||||    
T  3949639 tgattgaatttgtagtgtttggtaaaattagcgtttgaactaatttataaatatgaaatgacataaaaaagatatgtttagttaatat 3949726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 278
Target Start/End: Complemental strand, 20004049 - 20003997
Alignment:
Q  226 tgataagatataagctacttgaagtagtttatcaaaaaatgctataagctagt 278  Q
    ||||||| ||||||||||||||| ||| ||||||||||| |||||||||||||    
T  20004049 tgataagctataagctacttgaattagcttatcaaaaaacgctataagctagt 20003997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 31117727 - 31117782
Alignment:
Q  220 aaaaattgataagatataagctacttgaagtagtttatcaaaaaatgctataagct 275  Q
    ||||||||||| | ||||||||||||||| ||  ||||||||||| ||||||||||    
T  31117727 aaaaattgataggctataagctacttgaattatcttatcaaaaaaagctataagct 31117782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 189
Target Start/End: Complemental strand, 35058750 - 35058666
Alignment:
Q  108 tgattgaatttgtagtttttggtgaaattagtggttgaactacatgataaat---aaatgacattaaaaagatatgtttaattaa 189  Q
    ||||| |||||||||| |||||| ||||||| ||||||||||| | ||||||   ||||||||| |||| | ||| |||||||||    
T  35058750 tgattaaatttgtagtgtttggtaaaattagcggttgaactaccttataaatatgaaatgacataaaaagggtatatttaattaa 35058666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 10517960 - 10517924
Alignment:
Q  239 gctacttgaagtagtttatcaaaaaatgctataagct 275  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  10517960 gctacttgaaatagtttatctaaaaatgctataagct 10517924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 22593638 - 22593694
Alignment:
Q  220 aaaaattgataagatataagctacttgaagtagtttatc-aaaaaatgctataagct 275  Q
    ||||| ||||||| ||||||||||||||| ||| ||||| ||||| |||||||||||    
T  22593638 aaaaaatgataagctataagctacttgaattagcttatcgaaaaactgctataagct 22593694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 23908829 - 23908865
Alignment:
Q  113 gaatttgtagtttttggtgaaattagtggttgaacta 149  Q
    ||||||||| | |||||||||||||||||||||||||    
T  23908829 gaatttgtaatgtttggtgaaattagtggttgaacta 23908865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 32603032 - 32602967
Alignment:
Q  79 cttatagcggatagcaaataagctagctttgattgaatttgtagtttttggtgaaattagtggttgaa 146  Q
    |||||||| |||||| |||||  |||||  ||||||||||||||| ||| || |||||||||||||||    
T  32603032 cttatagccgatagcgaataaattagct--gattgaatttgtagtgtttagtaaaattagtggttgaa 32602967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 48817259 - 48817223
Alignment:
Q  239 gctacttgaagtagtttatcaaaaaatgctataagct 275  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  48817259 gctacttgaagtaggttatcaaaaaaagctataagct 48817223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 192
Target Start/End: Original strand, 2103182 - 2103285
Alignment:
Q  89 atagcaaataagctagctttgattgaatttgtagtttttggtgaaattagtggttgaactacatgataaat---aaatgacattaaaaagatatgtttaa 185  Q
    |||||| ||||||||||||  |||||||||||||| |||||| |||||| ||||||||| |  | ||||||   |||||||| ||||||||||||||| |    
T  2103182 atagcagataagctagctt--attgaatttgtagtgtttggtaaaattaatggttgaacaaacttataaatataaaatgaca-taaaaagatatgtttta 2103278  T
Q  186 ttaatat 192  Q
    |||||||    
T  2103279 ttaatat 2103285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 20988812 - 20988861
Alignment:
Q  220 aaaaattgataagatataagctacttgaagtagtttatcaaaaaatgcta 269  Q
    ||||| ||||||| ||||||||||||||| ||| ||||||||||||||||    
T  20988812 aaaaaatgataagctataagctacttgaattagcttatcaaaaaatgcta 20988861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 39276578 - 39276537
Alignment:
Q  108 tgattgaatttgtagtttttggtgaaattagtggttgaacta 149  Q
    |||||||||||||||| |||||| ||||||||||||||||||    
T  39276578 tgattgaatttgtagtgtttggtaaaattagtggttgaacta 39276537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 278
Target Start/End: Complemental strand, 3535240 - 3535188
Alignment:
Q  226 tgataagatataagctacttgaagtagtttatcaaaaaatgctataagctagt 278  Q
    ||||||| ||||||||||||||| ||| ||||||||||| |||||||| ||||    
T  3535240 tgataagctataagctacttgaattagcttatcaaaaaacgctataagttagt 3535188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 24418237 - 24418292
Alignment:
Q  220 aaaaattgataagatataagctacttgaagtagtttatcaaaaaatgctataagct 275  Q
    ||||| ||||||| ||||||||||||||| ||| ||||||||||  ||||||||||    
T  24418237 aaaaaatgataagctataagctacttgaattagcttatcaaaaaccgctataagct 24418292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 278
Target Start/End: Complemental strand, 26026756 - 26026698
Alignment:
Q  220 aaaaattgataagatataagctacttgaagtagtttatcaaaaaatgctataagctagt 278  Q
    ||||| ||||||| | |||||| |||||| ||||||||||||| | |||||||||||||    
T  26026756 aaaaaatgataagctctaagctccttgaattagtttatcaaaacacgctataagctagt 26026698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 50792376 - 50792417
Alignment:
Q  237 aagctacttgaagtagtttatcaaaaaatgctataagctagt 278  Q
    |||||||||||| ||| || ||||||||||||||||||||||    
T  50792376 aagctacttgaaatagcttctcaaaaaatgctataagctagt 50792417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 44555710 - 44555762
Alignment:
Q  226 tgataagatataagctacttgaagtagtttatcaaaaaatgctataagctagt 278  Q
    ||||||| ||||||||||||| | ||| ||||||||||| |||| ||||||||    
T  44555710 tgataagctataagctacttggattagcttatcaaaaaacgctaaaagctagt 44555762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 50570371 - 50570407
Alignment:
Q  236 taagctacttgaagtagtttatcaaaaaatgctataa 272  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  50570371 taagctacttgaagtagcttatcaaaaaatgttataa 50570407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 382 - 435
Target Start/End: Complemental strand, 14354692 - 14354639
Alignment:
Q  382 agggtccgtttgccaagcacaataatttagcttatagcttataagctcatatga 435  Q
    |||||| ||||| |||||||||||| ||| ||||||| ||||||||||||||||    
T  14354692 agggtctgtttggcaagcacaataagttaccttatagtttataagctcatatga 14354639  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 18892296 - 18892345
Alignment:
Q  229 taagatataagctacttgaagtagtttatcaaaaaatgctataagctagt 278  Q
    |||||||||||||||||||| ||| |||||| |||  |||||||||||||    
T  18892296 taagatataagctacttgaattagcttatcagaaagcgctataagctagt 18892345  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 8407635 - 8407565
Alignment:
Q  125 tttggtgaaattagtggttgaactacatgataaata---aatgacattaaaaagatatgtttaattaatat 192  Q
    |||||| ||||||| ||||||||||  | |||||||   |||||||| ||||||| |||||||||||||||    
T  8407635 tttggtaaaattagcggttgaactagcttataaatatgaaatgacataaaaaagagatgtttaattaatat 8407565  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 38684772 - 38684821
Alignment:
Q  229 taagatataagctacttgaagtagtttatcaaaaaatgctataagctagt 278  Q
    |||| ||||||||||||||| ||| ||||||||||| |||||||||||||    
T  38684772 taagctataagctacttgaattagcttatcaaaaaacgctataagctagt 38684821  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 278
Target Start/End: Complemental strand, 37083919 - 37083867
Alignment:
Q  226 tgataagatataagctacttgaagtagtttatcaaaaaatgctataagctagt 278  Q
    ||||||| ||||||||||||||| ||| |||| ||||| ||||||||||||||    
T  37083919 tgataagctataagctacttgaattagcttattaaaaattgctataagctagt 37083867  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 53023996 - 53023957
Alignment:
Q  160 aaatgacattaaaaagatatgtttaattaatatatttttc 199  Q
    |||||||||||||||||||| |||||||||||| ||||||    
T  53023996 aaatgacattaaaaagatatatttaattaatatttttttc 53023957  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 36879061 - 36879103
Alignment:
Q  236 taagctacttgaagtagtttatcaaaaaatgctataagctagt 278  Q
    ||||||||||||| ||| |||| ||||||||||||||||||||    
T  36879061 taagctacttgaattagcttataaaaaaatgctataagctagt 36879103  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 44560379 - 44560338
Alignment:
Q  108 tgattgaatttgtagtttttggtgaaattagtggttgaacta 149  Q
    ||||||||| |||||| |||||| ||||||||||||||||||    
T  44560379 tgattgaatctgtagtgtttggtcaaattagtggttgaacta 44560338  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 54399502 - 54399453
Alignment:
Q  217 gggaaaaattgataagatataagctacttgaagtagtttatcaaaaaatg 266  Q
    ||||||||||||||||  |||||||||||||| ||||||||  |||||||    
T  54399502 gggaaaaattgataagcaataagctacttgaattagtttatacaaaaatg 54399453  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 32326151 - 32326203
Alignment:
Q  226 tgataagatataagctacttgaagtagtttatcaaaaaatgctataagctagt 278  Q
    ||||||| ||||||||||||||| ||| ||||||||||   ||||||||||||    
T  32326151 tgataagctataagctacttgaattagcttatcaaaaacctctataagctagt 32326203  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 278
Target Start/End: Complemental strand, 8752545 - 8752486
Alignment:
Q  219 gaaaaattgataagatataagctacttgaagtagtttatcaaaaaatgctataagctagt 278  Q
    |||||| ||||| | |||||||||||||||| ||||||| |||||| || ||||||||||    
T  8752545 gaaaaaatgatatgttataagctacttgaagcagtttataaaaaaacgccataagctagt 8752486  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 278
Target Start/End: Original strand, 36602694 - 36602733
Alignment:
Q  239 gctacttgaagtagtttatcaaaaaatgctataagctagt 278  Q
    |||||||||| ||||||||||||||| |||||||||||||    
T  36602694 gctacttgaaatagtttatcaaaaaacgctataagctagt 36602733  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 359
Target Start/End: Complemental strand, 8752462 - 8752426
Alignment:
Q  323 gtctagtttggtcatatgagcttataggctcaaaatt 359  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  8752462 gtctattttggtcatatgagcttataggctaaaaatt 8752426  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 94364 - 94405
Alignment:
Q  237 aagctacttgaagtagtttatcaaaaaatgctataagctagt 278  Q
    |||||||||||| ||| || ||||||||||||||||||||||    
T  94364 aagctacttgaaatagcttctcaaaaaatgctataagctagt 94405  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 33982275 - 33982316
Alignment:
Q  237 aagctacttgaagtagtttatcaaaaaatgctataagctagt 278  Q
    |||||||||||| ||| ||||||||||| |||||||||||||    
T  33982275 aagctacttgaaatagcttatcaaaaaacgctataagctagt 33982316  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 38224764 - 38224723
Alignment:
Q  237 aagctacttgaagtagtttatcaaaaaatgctataagctagt 278  Q
    |||||||||||| ||| || ||||||||||||||||||||||    
T  38224764 aagctacttgaaatagcttctcaaaaaatgctataagctagt 38224723  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 43911104 - 43911145
Alignment:
Q  108 tgattgaatttgtagtttttggtgaaattagtggttgaacta 149  Q
    |||||||||||||||| |||||| |||| |||||||||||||    
T  43911104 tgattgaatttgtagtatttggtaaaatcagtggttgaacta 43911145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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