View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3276_low_5 (Length: 423)

Name: NF3276_low_5
Description: NF3276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3276_low_5
NF3276_low_5
[»] chr6 (5 HSPs)
chr6 (300-363)||(10070299-10070362)
chr6 (23-79)||(10069915-10069971)
chr6 (272-309)||(5172125-5172162)
chr6 (261-306)||(26320585-26320630)
chr6 (270-306)||(32149141-32149177)
[»] chr4 (8 HSPs)
chr4 (265-306)||(241406-241447)
chr4 (261-306)||(37463516-37463561)
chr4 (259-306)||(54857637-54857684)
chr4 (265-307)||(9913897-9913939)
chr4 (265-306)||(10303533-10303574)
chr4 (270-307)||(31604314-31604351)
chr4 (265-306)||(35287529-35287570)
chr4 (270-306)||(31780748-31780784)
[»] chr2 (6 HSPs)
chr2 (261-306)||(21497661-21497706)
chr2 (265-307)||(3752796-3752838)
chr2 (265-306)||(17736791-17736832)
chr2 (261-306)||(32957565-32957610)
chr2 (270-306)||(4056793-4056829)
chr2 (270-306)||(27314870-27314906)
[»] chr1 (5 HSPs)
chr1 (265-306)||(29739335-29739376)
chr1 (265-306)||(13673543-13673584)
chr1 (269-306)||(21015964-21016001)
chr1 (261-306)||(26498055-26498100)
chr1 (261-306)||(50595905-50595950)
[»] chr7 (7 HSPs)
chr7 (259-306)||(46207752-46207799)
chr7 (264-306)||(13044164-13044206)
chr7 (265-306)||(580948-580989)
chr7 (265-306)||(47589575-47589616)
chr7 (270-306)||(13955483-13955519)
chr7 (267-307)||(32862619-32862659)
chr7 (262-306)||(35666298-35666342)
[»] chr3 (5 HSPs)
chr3 (270-305)||(53705650-53705685)
chr3 (265-306)||(7868720-7868761)
chr3 (265-306)||(52575945-52575986)
chr3 (270-306)||(13800670-13800706)
chr3 (270-306)||(41737799-41737835)
[»] chr5 (2 HSPs)
chr5 (265-307)||(22619872-22619914)
chr5 (270-306)||(18391603-18391639)
[»] scaffold0098 (1 HSPs)
scaffold0098 (265-306)||(5423-5464)
[»] scaffold0006 (1 HSPs)
scaffold0006 (265-306)||(171157-171198)
[»] scaffold0072 (1 HSPs)
scaffold0072 (270-306)||(25698-25734)
[»] chr8 (3 HSPs)
chr8 (270-306)||(9656019-9656055)
chr8 (270-306)||(32878664-32878700)
chr8 (261-301)||(35103100-35103140)


Alignment Details
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 300 - 363
Target Start/End: Original strand, 10070299 - 10070362
Alignment:
Q  300 aaaatatattatcatgagaatggaggtttcttcatcgatatctaaatggatgctaagaactgat 363  Q
    |||| |||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||    
T  10070299 aaaacatattatcatgaaaatagaggtttctttatcgatatctaaatggatgctaagaactgat 10070362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 10069915 - 10069971
Alignment:
Q  23 cccattaaaatgcagtaatgcgatatacagtgagtgcaacaatcacgaacggatcaa 79  Q
    ||||||||||| ||||||||| |||||||  ||||||||||||||||||||||||||    
T  10069915 cccattaaaatacagtaatgctatatacaacgagtgcaacaatcacgaacggatcaa 10069971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 309
Target Start/End: Original strand, 5172125 - 5172162
Alignment:
Q  272 cttagctcggttggtaagaacaatgcataaaatatatt 309  Q
    |||||||||||||||| | |||||||||||||||||||    
T  5172125 cttagctcggttggtatggacaatgcataaaatatatt 5172162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 26320630 - 26320585
Alignment:
Q  261 gtcatcgttagcttagctcggttggtaagaacaatgcataaaatat 306  Q
    |||||||| |||||||||| ||||||| | ||||||||||||||||    
T  26320630 gtcatcgtgagcttagctcagttggtatggacaatgcataaaatat 26320585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 306
Target Start/End: Original strand, 32149141 - 32149177
Alignment:
Q  270 agcttagctcggttggtaagaacaatgcataaaatat 306  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  32149141 agcttagctcagttggtaagaacaatgcataatatat 32149177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 241447 - 241406
Alignment:
Q  265 tcgttagcttagctcggttggtaagaacaatgcataaaatat 306  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  241447 tcgtaagcttagctcggttggtatgaacaatgcataaaatat 241406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 37463516 - 37463561
Alignment:
Q  261 gtcatcgttagcttagctcggttggtaagaacaatgcataaaatat 306  Q
    |||||||| |||||||||||||||||| ||||||||||||| ||||    
T  37463516 gtcatcgtgagcttagctcggttggtatgaacaatgcataatatat 37463561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 306
Target Start/End: Complemental strand, 54857684 - 54857637
Alignment:
Q  259 cggtcatcgttagcttagctcggttggtaagaacaatgcataaaatat 306  Q
    ||||| |||| ||||||||||||||||||  |||||||||||||||||    
T  54857684 cggtcctcgtgagcttagctcggttggtataaacaatgcataaaatat 54857637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 307
Target Start/End: Original strand, 9913897 - 9913939
Alignment:
Q  265 tcgttagcttagctcggttggtaagaacaatgcataaaatata 307  Q
    |||| |||||||||| ||||||| |||||||||||||||||||    
T  9913897 tcgtgagcttagctcagttggtatgaacaatgcataaaatata 9913939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 10303574 - 10303533
Alignment:
Q  265 tcgttagcttagctcggttggtaagaacaatgcataaaatat 306  Q
    |||| |||||||||| ||||||||| ||||||||||||||||    
T  10303574 tcgtgagcttagctcagttggtaaggacaatgcataaaatat 10303533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 31604351 - 31604314
Alignment:
Q  270 agcttagctcggttggtaagaacaatgcataaaatata 307  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  31604351 agcttaactcagttggtaagaacaatgcataaaatata 31604314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 35287570 - 35287529
Alignment:
Q  265 tcgttagcttagctcggttggtaagaacaatgcataaaatat 306  Q
    |||| |||||||||| ||||||| ||||||||||||||||||    
T  35287570 tcgtgagcttagctcagttggtatgaacaatgcataaaatat 35287529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 306
Target Start/End: Original strand, 31780748 - 31780784
Alignment:
Q  270 agcttagctcggttggtaagaacaatgcataaaatat 306  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  31780748 agcttagctcagttggtaaggacaatgcataaaatat 31780784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 21497661 - 21497706
Alignment:
Q  261 gtcatcgttagcttagctcggttggtaagaacaatgcataaaatat 306  Q
    |||||||| |||||| ||||||||||||||||||||||||| ||||    
T  21497661 gtcatcgtgagcttaactcggttggtaagaacaatgcataatatat 21497706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 307
Target Start/End: Complemental strand, 3752838 - 3752796
Alignment:
Q  265 tcgttagcttagctcggttggtaagaacaatgcataaaatata 307  Q
    |||| ||||||||||||||| || |||||||||||||||||||    
T  3752838 tcgtgagcttagctcggttgttatgaacaatgcataaaatata 3752796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 17736791 - 17736832
Alignment:
Q  265 tcgttagcttagctcggttggtaagaacaatgcataaaatat 306  Q
    |||| |||||||||| ||||||| ||||||||||||||||||    
T  17736791 tcgtgagcttagctcagttggtatgaacaatgcataaaatat 17736832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 32957610 - 32957565
Alignment:
Q  261 gtcatcgttagcttagctcggttggtaagaacaatgcataaaatat 306  Q
    |||||||| || ||||||||||||||| ||||||||||||| ||||    
T  32957610 gtcatcgtgagtttagctcggttggtatgaacaatgcataatatat 32957565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 306
Target Start/End: Original strand, 4056793 - 4056829
Alignment:
Q  270 agcttagctcggttggtaagaacaatgcataaaatat 306  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  4056793 agcttagctcggttggtaaggacaatgcataatatat 4056829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 306
Target Start/End: Original strand, 27314870 - 27314906
Alignment:
Q  270 agcttagctcggttggtaagaacaatgcataaaatat 306  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  27314870 agcttaactcagttggtaagaacaatgcataaaatat 27314906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 29739335 - 29739376
Alignment:
Q  265 tcgttagcttagctcggttggtaagaacaatgcataaaatat 306  Q
    ||||||||||||||| ||||||||| ||||||||||||||||    
T  29739335 tcgttagcttagctcagttggtaaggacaatgcataaaatat 29739376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 13673543 - 13673584
Alignment:
Q  265 tcgttagcttagctcggttggtaagaacaatgcataaaatat 306  Q
    |||| |||||||||||||||||  ||||||||||||||||||    
T  13673543 tcgtgagcttagctcggttggtttgaacaatgcataaaatat 13673584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 306
Target Start/End: Original strand, 21015964 - 21016001
Alignment:
Q  269 tagcttagctcggttggtaagaacaatgcataaaatat 306  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  21015964 tagcttagctcagttggtaagaacaatgcataatatat 21016001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 26498055 - 26498100
Alignment:
Q  261 gtcatcgttagcttagctcggttggtaagaacaatgcataaaatat 306  Q
    |||||||| |||||||||| ||||||| | ||||||||||||||||    
T  26498055 gtcatcgtgagcttagctcagttggtacggacaatgcataaaatat 26498100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 50595950 - 50595905
Alignment:
Q  261 gtcatcgttagcttagctcggttggtaagaacaatgcataaaatat 306  Q
    |||||||| ||||||||||  |||||| ||||||||||||||||||    
T  50595950 gtcatcgtgagcttagctcaattggtatgaacaatgcataaaatat 50595905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 306
Target Start/End: Original strand, 46207752 - 46207799
Alignment:
Q  259 cggtcatcgttagcttagctcggttggtaagaacaatgcataaaatat 306  Q
    ||||| |||| |||||||||| ||||||| ||||||||||||||||||    
T  46207752 cggtcctcgtgagcttagctcagttggtatgaacaatgcataaaatat 46207799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 306
Target Start/End: Complemental strand, 13044206 - 13044164
Alignment:
Q  264 atcgttagcttagctcggttggtaagaacaatgcataaaatat 306  Q
    ||||| |||||||||| ||||||||| ||||||||||||||||    
T  13044206 atcgtgagcttagctcagttggtaaggacaatgcataaaatat 13044164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 580989 - 580948
Alignment:
Q  265 tcgttagcttagctcggttggtaagaacaatgcataaaatat 306  Q
    |||| |||||||||||||||||| | ||||||||||||||||    
T  580989 tcgtgagcttagctcggttggtatggacaatgcataaaatat 580948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 47589616 - 47589575
Alignment:
Q  265 tcgttagcttagctcggttggtaagaacaatgcataaaatat 306  Q
    |||| |||||||||| ||||||| ||||||||||||||||||    
T  47589616 tcgtgagcttagctcagttggtatgaacaatgcataaaatat 47589575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 306
Target Start/End: Original strand, 13955483 - 13955519
Alignment:
Q  270 agcttagctcggttggtaagaacaatgcataaaatat 306  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  13955483 agcttagctcagttggtatgaacaatgcataaaatat 13955519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 32862619 - 32862659
Alignment:
Q  267 gttagcttagctcggttggtaagaacaatgcataaaatata 307  Q
    ||||||||| ||| |||||||||||||| ||||||||||||    
T  32862619 gttagcttaactcagttggtaagaacaacgcataaaatata 32862659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 35666298 - 35666342
Alignment:
Q  262 tcatcgttagcttagctcggttggtaagaacaatgcataaaatat 306  Q
    ||||||| |||||| ||||||||||||| ||||||||||| ||||    
T  35666298 tcatcgtgagcttaactcggttggtaaggacaatgcataatatat 35666342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 305
Target Start/End: Complemental strand, 53705685 - 53705650
Alignment:
Q  270 agcttagctcggttggtaagaacaatgcataaaata 305  Q
    |||||||||| |||||||||||||||||||||||||    
T  53705685 agcttagctcagttggtaagaacaatgcataaaata 53705650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 7868720 - 7868761
Alignment:
Q  265 tcgttagcttagctcggttggtaagaacaatgcataaaatat 306  Q
    |||| |||||||||| ||||||||||||||||||||| ||||    
T  7868720 tcgtgagcttagctcagttggtaagaacaatgcataatatat 7868761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 52575945 - 52575986
Alignment:
Q  265 tcgttagcttagctcggttggtaagaacaatgcataaaatat 306  Q
    |||| |||||||||| ||||||| ||||||||||||||||||    
T  52575945 tcgtaagcttagctcagttggtatgaacaatgcataaaatat 52575986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 306
Target Start/End: Original strand, 13800670 - 13800706
Alignment:
Q  270 agcttagctcggttggtaagaacaatgcataaaatat 306  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  13800670 agcttagctcagttggtaagaacaatgcataatatat 13800706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 306
Target Start/End: Original strand, 41737799 - 41737835
Alignment:
Q  270 agcttagctcggttggtaagaacaatgcataaaatat 306  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  41737799 agcttagctcagttggtaaggacaatgcataaaatat 41737835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 307
Target Start/End: Original strand, 22619872 - 22619914
Alignment:
Q  265 tcgttagcttagctcggttggtaagaacaatgcataaaatata 307  Q
    |||| |||||||||| ||||||| |||||||||||||||||||    
T  22619872 tcgtgagcttagctcagttggtatgaacaatgcataaaatata 22619914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 306
Target Start/End: Original strand, 18391603 - 18391639
Alignment:
Q  270 agcttagctcggttggtaagaacaatgcataaaatat 306  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  18391603 agcttagctcagttggtaaggacaatgcataaaatat 18391639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 5423 - 5464
Alignment:
Q  265 tcgttagcttagctcggttggtaagaacaatgcataaaatat 306  Q
    |||| |||||||||| ||||||||||||||||||||| ||||    
T  5423 tcgtgagcttagctcagttggtaagaacaatgcataatatat 5464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 171157 - 171198
Alignment:
Q  265 tcgttagcttagctcggttggtaagaacaatgcataaaatat 306  Q
    |||| |||||||||||||||||  ||||||||||||||||||    
T  171157 tcgtgagcttagctcggttggtttgaacaatgcataaaatat 171198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 306
Target Start/End: Original strand, 25698 - 25734
Alignment:
Q  270 agcttagctcggttggtaagaacaatgcataaaatat 306  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  25698 agcttagctcagttggtaagaacaatgcataatatat 25734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 306
Target Start/End: Complemental strand, 9656055 - 9656019
Alignment:
Q  270 agcttagctcggttggtaagaacaatgcataaaatat 306  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  9656055 agcttagctcagttggtaaggacaatgcataaaatat 9656019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 306
Target Start/End: Original strand, 32878664 - 32878700
Alignment:
Q  270 agcttagctcggttggtaagaacaatgcataaaatat 306  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  32878664 agcttagctcagttggtaagaacaatgcataatatat 32878700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 35103100 - 35103140
Alignment:
Q  261 gtcatcgttagcttagctcggttggtaagaacaatgcataa 301  Q
    |||||||| |||||||||| ||||||| |||||||||||||    
T  35103100 gtcatcgtgagcttagctcagttggtatgaacaatgcataa 35103140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University