View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3276_low_6 (Length: 420)
Name: NF3276_low_6
Description: NF3276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3276_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 402
Target Start/End: Original strand, 28455003 - 28455387
Alignment:
| Q |
18 |
aagatagaagtttttctcaaggtcatgttgttgacagtagtctcgtgtttattttattatttgttctttattcgcggtatgaaattttgattcagatgga |
117 |
Q |
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| T |
28455003 |
aagatagaagtttttctcaaggtcatgttgttgacagtagtctcgtgtttattttattatttgttctttattcgcggtatgaaattttgattcagatgga |
28455102 |
T |
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| Q |
118 |
tgagaaggaaaaggaattgaaggaaaaacttgatttggacaaggagaggaaagataggagccttgaagagatgtcacaagaggcagaggaatacagaaaa |
217 |
Q |
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| T |
28455103 |
tgagaaggaaaaggaattgaaggaaaaacttgatttggacaaggagaggaaagataggagccttgaagagatgtcacaagaggcagaggaatacagaaaa |
28455202 |
T |
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| Q |
218 |
cttttcttgtaacattttagatagcaatagaaatataattctgtctgcttgatgcaaacttctgattttctcagtatagacaatttaactgcacttcctt |
317 |
Q |
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| T |
28455203 |
cttttcttgtaacattttagatagcaatagaaatagaattctgtctgcttgatgcaaacttctgattttctcagtatagacaatttaactgcacttcctt |
28455302 |
T |
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| Q |
318 |
gtggccacaaaaattaattcctttactttagaactttgaattgtactattgaccatacaagtcatagaaatagtaaccatctgtg |
402 |
Q |
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| T |
28455303 |
gtggccacaaaaattaattcctttactttagaactttgaattgtactcttgaccatacaagccataggaatagtaatcatctgtg |
28455387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 28523649 - 28523705
Alignment:
| Q |
161 |
gagaggaaagataggagccttgaagagatgtcacaagaggcagaggaatacagaaaa |
217 |
Q |
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| T |
28523649 |
gagaggaaagataggagccttgatgaaatggcacaagaagctgatgcatacagaaaa |
28523705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 235 - 402
Target Start/End: Original strand, 8763951 - 8764119
Alignment:
| Q |
235 |
tagatagcaatagaaatataattctgtctgcttgatgcaaacttctgattttctcagtatagacaatttaactgcacttccttgtggccaca--aaaatt |
332 |
Q |
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| T |
8763951 |
tagatagcaatagaaatataattctgtctgcttgatgcaaacttctgattttctccgtatagacaatt-aactgcaattccttgaggctacagaaaaatt |
8764049 |
T |
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| Q |
333 |
aattcctttactttagaactttgaattgtactattgaccatacaagtcatagaaatagtaaccatctgtg |
402 |
Q |
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| T |
8764050 |
tattcctttactttagaactttgaattgtactattgaccatacaagtcatagaaatagtaatcatctgtg |
8764119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 235 - 402
Target Start/End: Complemental strand, 8776629 - 8776461
Alignment:
| Q |
235 |
tagatagcaatagaaatataattctgtctgcttgatgcaaacttctgattttctcagtatagacaatttaactgcacttccttgtggccaca--aaaatt |
332 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||| ||| ||| |||||| |
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| T |
8776629 |
tagatagcaatagaaatataattctgtctgcttgatgcaaacttctgattttctccgtatagacaatt-aactgcaattccttgaggctacagaaaaatt |
8776531 |
T |
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| Q |
333 |
aattcctttactttagaactttgaattgtactattgaccatacaagtcatagaaatagtaaccatctgtg |
402 |
Q |
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| T |
8776530 |
tattcctttactttagaactttgaattgtactattgaccatacaagtcatagaaatagtaatcatctgtg |
8776461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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