View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3277_high_1 (Length: 657)
Name: NF3277_high_1
Description: NF3277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3277_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 276 - 641
Target Start/End: Complemental strand, 40468045 - 40467686
Alignment:
| Q |
276 |
ataattttatttgtaaaaaaccaaatatacaacattacaagagataaattgttgaatggtcgattatttacatgcccaaagaaacatatatttaatagtg |
375 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40468045 |
ataattttatttgtgaaaaaccaaatatacaacattacaagagataaattgttgaatggtcgattatttacatgcccaaagaaacatat--ttaatagtg |
40467948 |
T |
|
| Q |
376 |
ttaaaaacggaagnnnnnnnnnntcatacaacagttttagaatatgaatacttgttgagaaataaaattcatatctgattatatgtctttaatttcttgt |
475 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40467947 |
ttaaaaacggaagaaaaaaaat-tcatacaacagttttagaatatgaatacttgttgagaaataaaattcatatctgattatatgtctttaatttcttgt |
40467849 |
T |
|
| Q |
476 |
tataaaatagtataattttgcttagcgataactataaaattattttttcttgaatgcattgataaatttttgtatataaacattttatagcatatgatct |
575 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40467848 |
tataaaatagtataattttgcttagcgataactataaa---aaattttcatgaatgcattgataaatttttgtatataaacattttatagcatatgatct |
40467752 |
T |
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| Q |
576 |
cttaaatatataatcatatgctattgttttcattaatcaaaatttctgaattcgtcattgaatatg |
641 |
Q |
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| T |
40467751 |
cttaaatatataatcatttgctattgtctttattaatcaaaatttctgaattcgtcattaaatatg |
40467686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 27 - 284
Target Start/End: Complemental strand, 40469414 - 40469156
Alignment:
| Q |
27 |
ccattaaggcgtaagtactatttgaatcaattcaaattcgactattgcacggatgataaagcaaaaatccttcccaaacctcaaaaaactctcattcctc |
126 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40469414 |
ccatgaaggcgtaagtactatttgaatcaattcaaattctactattgcacggatgataaagcaaaaatccttcccaaacctcataaaactctcattcctc |
40469315 |
T |
|
| Q |
127 |
aagatgttatctcaaannnnnnnnnnn-gtaatttatctttgaacaatttattttctcgtacatttaaatttcttgaaattgatctttctcaaattaatt |
225 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40469314 |
aagatgttatgtcattttctttttttttgtaatttatctttgaacaatttattttctcgtacatttaaatttcttgaaattgatctttctcaaatcaatt |
40469215 |
T |
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| Q |
226 |
caggcacagatccacattaaacacaatggggcagccgaccccactaatgaataatttta |
284 |
Q |
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| T |
40469214 |
caggcacagatccacattaaacacaatggggcagccaaccccactgatgaataatttta |
40469156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 485 - 565
Target Start/End: Complemental strand, 32630078 - 32629999
Alignment:
| Q |
485 |
gtataattttgcttagcgataactataaaattattttttcttgaatgcattgataaatttttgtatataaacattttatag |
565 |
Q |
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|||||||||||||||| |||||||| ||||||||||| || |||| | ||||||| |||||| |||||||||||||||||| |
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| T |
32630078 |
gtataattttgcttagtgataactagaaaattattttatcatgaacgaattgatatattttt-tatataaacattttatag |
32629999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 485 - 521
Target Start/End: Complemental strand, 32630267 - 32630231
Alignment:
| Q |
485 |
gtataattttgcttagcgataactataaaattatttt |
521 |
Q |
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| T |
32630267 |
gtataattttgcttagcgataactaaaaaattatttt |
32630231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 498 - 546
Target Start/End: Complemental strand, 47103260 - 47103212
Alignment:
| Q |
498 |
tagcgataactataaaattattttttcttgaatgcattgataaattttt |
546 |
Q |
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||||||||| ||||||||||||| ||||||||||||||| | |||||| |
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| T |
47103260 |
tagcgataattataaaattatttgatcttgaatgcattgaaatattttt |
47103212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 491 - 571
Target Start/End: Complemental strand, 36029076 - 36028997
Alignment:
| Q |
491 |
ttttgcttagcgataactataaaattattttttcttgaatgcattgataaatttttgtatataaacattttatagcatatg |
571 |
Q |
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||||| ||||||||||||||||||||||||| || ||| ||||| ||| |||||| |||||||| ||||||||||||||| |
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| T |
36029076 |
ttttgtttagcgataactataaaattattttatcatgagtgcatcaatatattttt-tatataaatattttatagcatatg |
36028997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 490 - 575
Target Start/End: Original strand, 33951979 - 33952063
Alignment:
| Q |
490 |
attttgcttagcgataactataaaattattttttcttgaatgcattgataaatttttgtatataaacattttatagcatatgatct |
575 |
Q |
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| T |
33951979 |
attttgcttaacgataattataaaattattttatcatgaatatatcgacatattttt-tatataaacattttataacatatgatct |
33952063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 497 - 534
Target Start/End: Original strand, 6511019 - 6511056
Alignment:
| Q |
497 |
ttagcgataactataaaattattttttcttgaatgcat |
534 |
Q |
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||||||||||||||||||||||||| |||||||||||| |
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| T |
6511019 |
ttagcgataactataaaattattttatcttgaatgcat |
6511056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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