View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3277_high_13 (Length: 390)
Name: NF3277_high_13
Description: NF3277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3277_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 20 - 382
Target Start/End: Complemental strand, 11025621 - 11025259
Alignment:
| Q |
20 |
ccatcgagggcaggtatatgtttcaaaacaatattaccaaaagcattgaccactcctaaattcaacatatacaaagcccttgaggttgagactcaagcag |
119 |
Q |
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| T |
11025621 |
ccatcgagggcaggtatatgtttcaaaacaatattaccgaaagcattgaccactcctaaattcaacatatacaaagcccttgaggttgagactcaagcag |
11025522 |
T |
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| Q |
120 |
caagtgtacaaatcaataaaacgttagctatcattacatctctgatacctaaatatgcaaacaacgcagacgtaagtggatcacttgattgttgcaagca |
219 |
Q |
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| T |
11025521 |
caagtgtacaaatcaataaaacgttagctatcattacatctctgatacctaaatatgcaaacaacgcagacgtaagtggatcacttgattgttgcaagca |
11025422 |
T |
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| Q |
220 |
acaatatgaaatgatgcccgattctataaccaatgccgttgcggccctcgctgtgcgcaatgctcaagaagtaaatgcccaatttagcgcgattctttca |
319 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
11025421 |
acaatatgaaatgatgcctgattctataaccaatgccgttgcggccctcgctgtgcgcaatgctcaagaagtaaatgctcaatttagcgggattctttca |
11025322 |
T |
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| Q |
320 |
taccatacctcttgtgtagatacttttgctgagagtactgattatcctgttgcaccctttgct |
382 |
Q |
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| T |
11025321 |
taccatacctcttgtgtagatacttttgctgagagtaatgattatcctgttgcaccctttgct |
11025259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 10891432 - 10891535
Alignment:
| Q |
38 |
tgtttcaaaacaatattaccaaaagcattgaccactcctaaattcaacatatacaaagcccttgaggttgagactcaagcagcaagtgtacaaatcaata |
137 |
Q |
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|||| ||| |||||||||||||||||| || | ||||||||||||||||||||| ||||||||||||||||||||||| | ||||| || |||||||| |
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| T |
10891432 |
tgttacaatacaatattaccaaaagcagagagcgctcctaaattcaacatatacacagcccttgaggttgagactcaagaaacaagtataagaatcaata |
10891531 |
T |
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| Q |
138 |
aaac |
141 |
Q |
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|||| |
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| T |
10891532 |
aaac |
10891535 |
T |
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