View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3277_high_24 (Length: 269)
Name: NF3277_high_24
Description: NF3277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3277_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 119 - 198
Target Start/End: Complemental strand, 8097008 - 8096929
Alignment:
| Q |
119 |
gctcaaattttcctctttaaatcatgttcctcctttctaaaaatttatcatttcatatttaaaatataacctttcttaat |
198 |
Q |
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| T |
8097008 |
gctcaaattttcctctttaaatcatgttcctccattctaaaaatttatcatttcatatttaaaatataacctttcttaat |
8096929 |
T |
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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 24319055 - 24319132
Alignment:
| Q |
120 |
ctcaaattttcctctttaaatcatgttcctcctttctaaaaatttatcatttcatatttaaaatataacctttcttaa |
197 |
Q |
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||||||| |||||||||||||||| ||||||| |||||||||| ||| |||| |||||||| |||| ||||||||||| |
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| T |
24319055 |
ctcaaatattcctctttaaatcatattcctccattctaaaaatgtatgattttatatttaatatatgacctttcttaa |
24319132 |
T |
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