View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3277_high_25 (Length: 255)
Name: NF3277_high_25
Description: NF3277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3277_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 172052 - 171809
Alignment:
| Q |
1 |
tggactcaccatcatccaaatgactatatctcgtatcaaactgatcctctaaccactgtgagttcaaactacagtctccactcatatcaattcgtgaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
172052 |
tggactcaccatcatccaaatgactatatctcatatcaaactgatcctctaaccactgtgagttcaaactacagtctccactcatatcaagttgtgaatc |
171953 |
T |
|
| Q |
101 |
acctcgaattgcaactgaattagaaaatcttgacaattgtgcagtactaccgtgccaataagaattttgttttctcaattcaatttttcttgatgtgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
171952 |
acctcgaattgcaactgaattagaaaatcttgacaattgtgcagtactaccgtgccaataagaattttgttttctcaattcaatttttcttgatgtgaaa |
171853 |
T |
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| Q |
201 |
acacgatcagggccagaaagagcagcttcctctttcaaattcat |
244 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
171852 |
acacgatcagggccaggaagagcagcttcctctttcaaattcat |
171809 |
T |
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