View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3277_high_39 (Length: 233)
Name: NF3277_high_39
Description: NF3277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3277_high_39 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 46685402 - 46685174
Alignment:
| Q |
1 |
ctattataagttgtgaattaccttaatttatattgnnnnnnnagtaagctggtttgtacactgacttcaaggtttattttgnnnnnnnnnttcagcatac |
100 |
Q |
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| T |
46685402 |
ctattataagttgtgaattaccttaatttatattgtttttttagtaagctggtttgtacactgacttcaaggtttattttgaaaaaaaaattcagcatac |
46685303 |
T |
|
| Q |
101 |
cttaaatataaaattactttcatcgagtaggttctatatgggacactagttgtaatcttatcaatttcctttaattgtatgcaattaaacnnnnnnnncc |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
46685302 |
cttaaatataaaattactttcattgagtaggttctatatgggacactagttgtaatcttatcaattttctttaattgtatgcaattaaactttattttcc |
46685203 |
T |
|
| Q |
201 |
tttatttttcagttattgtgagtgctttg |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
46685202 |
tttatttttcagttattgtgagtgctttg |
46685174 |
T |
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