View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3277_high_40 (Length: 232)

Name: NF3277_high_40
Description: NF3277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3277_high_40
NF3277_high_40
[»] chr5 (5 HSPs)
chr5 (1-232)||(41900319-41900550)
chr5 (7-230)||(32268537-32268760)
chr5 (43-231)||(41886474-41886662)
chr5 (185-230)||(28532815-28532860)
chr5 (196-232)||(29021797-29021833)
[»] chr4 (9 HSPs)
chr4 (5-145)||(645194-645334)
chr4 (121-230)||(553761-553870)
chr4 (186-230)||(3437630-3437674)
chr4 (90-144)||(1545952-1546006)
chr4 (44-118)||(21833142-21833216)
chr4 (185-230)||(7308553-7308598)
chr4 (198-230)||(1755555-1755587)
chr4 (178-230)||(2381638-2381690)
chr4 (178-230)||(2391266-2391318)
[»] chr7 (2 HSPs)
chr7 (178-230)||(10615715-10615767)
chr7 (101-151)||(15091524-15091574)
[»] chr6 (7 HSPs)
chr6 (90-145)||(11935952-11936007)
chr6 (90-145)||(11947932-11947987)
chr6 (178-230)||(6417094-6417146)
chr6 (178-231)||(6423906-6423959)
chr6 (114-232)||(6395537-6395652)
chr6 (178-228)||(19633104-19633154)
chr6 (197-230)||(8913441-8913474)
[»] chr3 (4 HSPs)
chr3 (90-145)||(1657614-1657669)
chr3 (35-230)||(51113056-51113251)
chr3 (178-230)||(51763392-51763444)
chr3 (178-230)||(13469651-13469703)
[»] chr8 (5 HSPs)
chr8 (90-145)||(28245972-28246027)
chr8 (121-230)||(17642880-17642989)
chr8 (187-230)||(32151970-32152013)
chr8 (100-153)||(34935911-34935964)
chr8 (178-230)||(17635658-17635710)
[»] chr1 (4 HSPs)
chr1 (36-230)||(9587263-9587456)
chr1 (166-230)||(7555200-7555264)
chr1 (198-230)||(19467453-19467485)
chr1 (111-151)||(33161279-33161319)
[»] scaffold1155 (1 HSPs)
scaffold1155 (111-215)||(1821-1925)
[»] scaffold0345 (1 HSPs)
scaffold0345 (111-215)||(8291-8395)
[»] scaffold0105 (1 HSPs)
scaffold0105 (111-215)||(30584-30688)
[»] chr2 (1 HSPs)
chr2 (108-232)||(45244780-45244904)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 41900319 - 41900550
Alignment:
Q  1 aatctgtgatcaaactctcccttttcttcctactctctttcatagatttaccaatctcacctccctcaatctctcgcgcttctacggtaacctcaacaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41900319 aatctgtgatcaaactctcccttttcttcctactctctttcatagatttaccaatctcacctccctcaatctctcgcgcttctatggtaacctcaacaaa 41900418  T
Q  101 cttctatgtcaaatctctaattttccattgaaactcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaa 200  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41900419 cttctttgtcaaatctctcattttccattgaaactcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaa 41900518  T
Q  201 agattacaactttgacctctctcacttgttac 232  Q
    ||||||||||||||||||||||||||||||||    
T  41900519 agattacaactttgacctctctcacttgttac 41900550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 32268760 - 32268537
Alignment:
Q  7 tgatcaaactctcccttttcttcctactctctttcatagatttaccaatctcacctccctcaatctctcgcgcttctacggtaacctcaacaaacttcta 106  Q
    ||||| ||| || |||||||||||||||||||| | |||||| ||||| |||||||||||| | |||||| | ||| ||||||| |||||||| |||||     
T  32268760 tgatccaacccttccttttcttcctactctcttgcgtagattcaccaacctcacctccctcgacctctcgtgtttcaacggtaaactcaacaagcttctc 32268661  T
Q  107 tgtcaaatctctaattttccattgaaactcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagatta 206  Q
    ||||||||||||  |||||||||||||||||| |||||||| |||||| || || || |||| ||| || ||||||| |   ||||||| || |||||||    
T  32268660 tgtcaaatctctcgttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcagactttttcgaagaagatta 32268561  T
Q  207 caactttgacctctctcacttgtt 230  Q
    ||||||||||||||||||||||||    
T  32268560 caactttgacctctctcacttgtt 32268537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 43 - 231
Target Start/End: Original strand, 41886474 - 41886662
Alignment:
Q  43 tagatttaccaatctcacctccctcaatctctcgcgcttctacggtaacctcaacaaacttctatgtcaaatctctaattttccattgaaactcacatca 142  Q
    |||||| | |||||||||||| ||| | || ||  |||||  ||||||||||| |||||||||  | |||||||||||||||||||||||||||||||||    
T  41886474 tagattcatcaatctcacctctctcgacctttctagcttccgcggtaacctcagcaaacttctcggccaaatctctaattttccattgaaactcacatca 41886573  T
Q  143 ctcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgtta 231  Q
    ||||| || ||  | ||| |  | || ||| ||  |||||| |||| |||| ||||||||||||||||||| |||||||||| ||||||    
T  41886574 ctcaatctttcgtatcaacgtattattcccacaaatgggttgcgagtttttgccaaaaagattacaactttaacctctctcatttgtta 41886662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 28532860 - 28532815
Alignment:
Q  185 cgagctttttccaaaaagattacaactttgacctctctcacttgtt 230  Q
    |||||||||||  |||| |||||||||||||||||| |||||||||    
T  28532860 cgagctttttcacaaaacattacaactttgacctctttcacttgtt 28532815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 29021833 - 29021797
Alignment:
Q  196 caaaaagattacaactttgacctctctcacttgttac 232  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  29021833 caaaaacattactactttgacctctctcacttgttac 29021797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 645334 - 645194
Alignment:
Q  5 tgtgatcaaactctcccttttcttcctactctctttcatagatttaccaatctcacctccctcaatctctcgcgcttctacggtaacctcaacaaacttc 104  Q
    |||||||| || | |||||| ||||||   |||||||| || |||||||| || | ||||||  | |||||| ||| ||  ||| |||||||||| ||||    
T  645334 tgtgatcagacgcaccctttccttcctcgcctctttcaaaggtttaccaaccttaactcccttgacctctcgtgctactcgggttacctcaacaagcttc 645235  T
Q  105 tatgtcaaatctctaattttccattgaaactcacatcactc 145  Q
    |||| |||||||||| ||||||||||| |||||||||||||    
T  645234 tatgccaaatctctagttttccattgagactcacatcactc 645194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 230
Target Start/End: Complemental strand, 553870 - 553761
Alignment:
Q  121 ttttccattgaaactcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaactttgacctct 220  Q
    |||||||||||| |||||||||||| | |||||  |  ||  |  ||| ||||||  |||||| |||||||| ||| |||| ||||||||||||||||||    
T  553870 ttttccattgaacctcacatcactcgatctctcccaaaaacccaccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacctct 553771  T
Q  221 ctcacttgtt 230  Q
    ||||| ||||    
T  553770 ctcacctgtt 553761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 3437630 - 3437674
Alignment:
Q  186 gagctttttccaaaaagattacaactttgacctctctcacttgtt 230  Q
    ||||||| ||| ||||||||||||||||||||||||||| |||||    
T  3437630 gagctttctcccaaaagattacaactttgacctctctcagttgtt 3437674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 1546006 - 1545952
Alignment:
Q  90 acctcaacaaacttctatgtcaaatctctaattttccattgaaactcacatcact 144  Q
    |||||||||| ||||| |  |||||||||| ||||||||||||||||||| ||||    
T  1546006 acctcaacaagcttctctaccaaatctctacttttccattgaaactcacaacact 1545952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 118
Target Start/End: Original strand, 21833142 - 21833216
Alignment:
Q  44 agatttaccaatctcacctccctcaatctctcgcgcttctacggtaacctcaacaaacttctatgtcaaatctct 118  Q
    ||||| ||||| || |||||||| || ||||| |||||| ||||| |||||||||| |||||  |||||||||||    
T  21833142 agattcaccaaccttacctcccttaacctctctcgcttccacggtgacctcaacaaccttctccgtcaaatctct 21833216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 7308598 - 7308553
Alignment:
Q  185 cgagctttttccaaaaagattacaactttgacctctctcacttgtt 230  Q
    |||||||| ||| | ||||||||||||||||||| |||||||||||    
T  7308598 cgagctttgtcccagaagattacaactttgacctgtctcacttgtt 7308553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 1755587 - 1755555
Alignment:
Q  198 aaaagattacaactttgacctctctcacttgtt 230  Q
    |||||||||||||||||||||||||||| ||||    
T  1755587 aaaagattacaactttgacctctctcacatgtt 1755555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 2381638 - 2381690
Alignment:
Q  178 tgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgtt 230  Q
    |||||| |||||||| ||||||||||| | || |||||||||||| |||||||    
T  2381638 tgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt 2381690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 2391266 - 2391318
Alignment:
Q  178 tgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgtt 230  Q
    |||||| |||||||| ||||||||||| | || |||||||||||| |||||||    
T  2391266 tgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt 2391318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 10615767 - 10615715
Alignment:
Q  178 tgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgtt 230  Q
    |||||| |||||||| ||| |||||||||||||||||||||||||||||||||    
T  10615767 tgggttacgagctttctcccaaaagattacaactttgacctctctcacttgtt 10615715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 15091524 - 15091574
Alignment:
Q  101 cttctatgtcaaatctctaattttccattgaaactcacatcactcaaactc 151  Q
    ||||| ||||||||||| | ||| ||||||||||||| |||||||||||||    
T  15091524 cttctctgtcaaatctcaattttcccattgaaactcaaatcactcaaactc 15091574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 11935952 - 11936007
Alignment:
Q  90 acctcaacaaacttctatgtcaaatctctaattttccattgaaactcacatcactc 145  Q
    |||||||||| |||||||| |||||||||| ||||||||||| |||||||||||||    
T  11935952 acctcaacaagcttctatgccaaatctctagttttccattgagactcacatcactc 11936007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 11947932 - 11947987
Alignment:
Q  90 acctcaacaaacttctatgtcaaatctctaattttccattgaaactcacatcactc 145  Q
    |||||||||| |||||||| |||||||||| ||||||||||| |||||||||||||    
T  11947932 acctcaacaagcttctatgccaaatctctagttttccattgagactcacatcactc 11947987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 6417146 - 6417094
Alignment:
Q  178 tgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgtt 230  Q
    |||||| |||||||| ||| |||||| ||||||||||||||||||||||||||    
T  6417146 tgggttacgagctttctcccaaaagaatacaactttgacctctctcacttgtt 6417094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 6423959 - 6423906
Alignment:
Q  178 tgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgtta 231  Q
    |||||| |||||||| ||| |||| || ||||||||||||||||||||||||||    
T  6423959 tgggttgcgagctttctcccaaaacataacaactttgacctctctcacttgtta 6423906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 232
Target Start/End: Complemental strand, 6395652 - 6395537
Alignment:
Q  114 tctctaattttccattgaaactcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaacttt 213  Q
    |||| ||||| |||||||||||||||||||||||||||   ||| || ||  | | ||| ||  |||||| | |||| | ||| |||| |||||||||||    
T  6395652 tctcaaatttcccattgaaactcacatcactcaaactc---gacgaatgctactttcccacagatgggttgcaagctctctcccaaaatattacaacttt 6395556  T
Q  214 gacctctctcacttgttac 232  Q
    ||||||||||| |||||||    
T  6395555 gacctctctcagttgttac 6395537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 19633154 - 19633104
Alignment:
Q  178 tgggtttcgagctttttccaaaaagattacaactttgacctctctcacttg 228  Q
    |||||| |||||||| ||| |||  ||||||||||||||||||||||||||    
T  19633154 tgggttgcgagctttctccgaaagcattacaactttgacctctctcacttg 19633104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 230
Target Start/End: Original strand, 8913441 - 8913474
Alignment:
Q  197 aaaaagattacaactttgacctctctcacttgtt 230  Q
    |||||||||||||||||||||||||||| |||||    
T  8913441 aaaaagattacaactttgacctctctcaattgtt 8913474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 1657669 - 1657614
Alignment:
Q  90 acctcaacaaacttctatgtcaaatctctaattttccattgaaactcacatcactc 145  Q
    |||||||||| |||||||| |||||||||| ||||||||||| |||||||||||||    
T  1657669 acctcaacaagcttctatgccaaatctctagttttccattgagactcacatcactc 1657614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 230
Target Start/End: Original strand, 51113056 - 51113251
Alignment:
Q  35 ctctttcatagatttaccaatctcacctccctcaatctctcgcgcttctacggtaacctcaacaaacttctatgtcaaatctctaattttccattgaaac 134  Q
    ||||||| |||||| ||||| |||||||||||||| ||  |  ||| || |  | |||||||||| || |||| | ||||||||  ||| ||||||||||    
T  51113056 ctctttcttagattcaccaacctcacctccctcaaccttacatgctactcctttgacctcaacaacctgctatttgaaatctctcgtttcccattgaaac 51113155  T
Q  135 tcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgtt 230  Q
    | || ||||||||  ||||  || ||||| | || ||| ||  ||| || |||||||| ||  |||| ||||||||| ||||||||||||||||||    
T  51113156 ttacttcactcaatatctccaacaaaagcattattcccacaaatggattgcgagctttctcggaaaatattacaactctgacctctctcacttgtt 51113251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 51763392 - 51763444
Alignment:
Q  178 tgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgtt 230  Q
    |||||| |||| ||||||  ||||||||||||||||||| |||||||||||||    
T  51763392 tgggttgcgagttttttcacaaaagattacaactttgacatctctcacttgtt 51763444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 13469651 - 13469703
Alignment:
Q  178 tgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgtt 230  Q
    |||||| |||||||| ||| |||||| ||||||  ||||||||||||||||||    
T  13469651 tgggttacgagctttctcccaaaagaatacaacgctgacctctctcacttgtt 13469703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 28245972 - 28246027
Alignment:
Q  90 acctcaacaaacttctatgtcaaatctctaattttccattgaaactcacatcactc 145  Q
    |||||||||| |||||||| |||||||||| ||||||||||| | |||||||||||    
T  28245972 acctcaacaagcttctatgccaaatctctagttttccattgagattcacatcactc 28246027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 230
Target Start/End: Original strand, 17642880 - 17642989
Alignment:
Q  121 ttttccattgaaactcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaactttgacctct 220  Q
    ||||||||||||||||||||||||||| |||||  ||||   |  ||| ||| |   |||||| | |||||| ||| | || ||||||||||||||||||    
T  17642880 ttttccattgaaactcacatcactcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactttgacctct 17642979  T
Q  221 ctcacttgtt 230  Q
    ||||||||||    
T  17642980 ctcacttgtt 17642989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 32152013 - 32151970
Alignment:
Q  187 agctttttccaaaaagattacaactttgacctctctcacttgtt 230  Q
    |||||| ||| |||| ||||||||||||||||||||||||||||    
T  32152013 agctttctcccaaaacattacaactttgacctctctcacttgtt 32151970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 34935911 - 34935964
Alignment:
Q  100 acttctatgtcaaatctctaattttccattgaaactcacatcactcaaactctc 153  Q
    ||||||||||||||| |||| ||| |||||||| || ||||||||||| |||||    
T  34935911 acttctatgtcaaatttctagtttcccattgaaccttacatcactcaatctctc 34935964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 17635658 - 17635710
Alignment:
Q  178 tgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgtt 230  Q
    |||||| |||||||| |||   || ||||||||||||||||||||||||||||    
T  17635658 tgggttacgagctttctcccggaatattacaactttgacctctctcacttgtt 17635710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 230
Target Start/End: Complemental strand, 9587456 - 9587263
Alignment:
Q  36 tctttcatagatttaccaatctcacctccctcaatctctcgcgcttctacggtaacctcaacaaacttctatgtcaaatctctaattttccattgaaact 135  Q
    ||||||| ||||| ||||| |||||||||||| | ||| || ||| | | ||| |||||||| | ||||||| |||| |||||  ||| |||||||||||    
T  9587456 tctttcaaagattcaccaacctcacctccctcgacctcacg-gctacaaaggtgacctcaacgagcttctatctcaagtctcttgtttcccattgaaact 9587358  T
Q  136 cacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgtt 230  Q
    |||||| ||||| |||||    |||  |  ||| |||||| ||||||| |  ||||| |||  |||||||||||| ||||| ||||||| |||||    
T  9587357 cacatcgctcaatctctccagtcaatcctgcattcccgcaattgggttgcatgctttctccttaaagattacaacgttgacatctctcatttgtt 9587263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 7555264 - 7555200
Alignment:
Q  166 catccccgcatttgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgtt 230  Q
    |||||| ||| |||| || |||||||| ||| |||| ||||||||||| ||||| ||||||||||    
T  7555264 catccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgtt 7555200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Original strand, 19467453 - 19467485
Alignment:
Q  198 aaaagattacaactttgacctctctcacttgtt 230  Q
    |||| ||||||||||||||||||||||||||||    
T  19467453 aaaatattacaactttgacctctctcacttgtt 19467485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 33161319 - 33161279
Alignment:
Q  111 aaatctctaattttccattgaaactcacatcactcaaactc 151  Q
    |||||| |||||| |||||||||||| ||||||||||||||    
T  33161319 aaatctataatttcccattgaaactctcatcactcaaactc 33161279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 1821 - 1925
Alignment:
Q  111 aaatctctaattttccattgaaactcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaac 210  Q
    ||||||||  ||| |||||||| |||||||||||||| |||||  |||||  | | || ||||||  |||||| |||| ||| ||| |||| ||||||||    
T  1821 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 1920  T
Q  211 tttga 215  Q
    |||||    
T  1921 tttga 1925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 215
Target Start/End: Complemental strand, 8395 - 8291
Alignment:
Q  111 aaatctctaattttccattgaaactcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaac 210  Q
    ||||||||  ||| |||||||| |||||||||||||| |||||  |||||  | | || ||||||  |||||| |||| ||| ||| |||| ||||||||    
T  8395 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 8296  T
Q  211 tttga 215  Q
    |||||    
T  8295 tttga 8291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 30584 - 30688
Alignment:
Q  111 aaatctctaattttccattgaaactcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaac 210  Q
    ||||||||  ||| |||||||| |||||||||||||| |||||  |||||  | | || ||||||  |||||| |||| ||| ||| |||| ||||||||    
T  30584 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 30683  T
Q  211 tttga 215  Q
    |||||    
T  30684 tttga 30688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 232
Target Start/End: Original strand, 45244780 - 45244904
Alignment:
Q  108 gtcaaatctctaattttccattgaaactcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattac 207  Q
    ||||||||||| | || ||||||||| || | |||||| | ||||| |||||||||  ||| |||||   |||||| | |||||| ||| |||  ||||     
T  45244780 gtcaaatctctcagttaccattgaaaatctcgtcactctatctctccgaccaaagcaccattcccgcgaatgggttgcaagctttctcccaaactattag 45244879  T
Q  208 aactttgacctctctcacttgttac 232  Q
    || |||||||||||||| |||||||    
T  45244880 aaatttgacctctctcatttgttac 45244904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University