View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3277_low_10 (Length: 447)
Name: NF3277_low_10
Description: NF3277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3277_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 38269230 - 38269635
Alignment:
| Q |
1 |
atagtggagaaattgtgaatgtagatggttttataggttcctgcagccaagaactacttgctaagggcagtgaattactcaaacgcacccgtaacggtac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38269230 |
atagtggagaaattgtgaatgtagatggttttataggttcctgcagccaagaactacttgctaagggcagtgaattactcaaacgcacccgtaacggtac |
38269329 |
T |
|
| Q |
101 |
attatcattattaccaattacaaattatgctattgagactacatcaaaatttctggtttgaaaaacaattaaatcctgttttggtgataactgcaggtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38269330 |
attatcattattaccaattacaaattatgctattaagactacatcaaaatttctggtttgaaaaacaattaaattctgttttggtgataactgcaggtga |
38269429 |
T |
|
| Q |
201 |
tctacactggaaaatagtttctgtttacatacatcgaacaggacatgtaaatttttctttcagaaattgacattagacagaattttctacatgttcattc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38269430 |
tctacactggaaaatagtttctgtttacatacatcgaacgggacatgtaaatttttctttcagaaattgacattagacagaattttctacatgttcattc |
38269529 |
T |
|
| Q |
301 |
attgacaaggcttgcaaacatttcaggtaatgctgaaaatgaagagcaaacatgttgcaggaacaataacaaaaaagaacaagagtaagttactaatagc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38269530 |
attgacaaggcttgcaaacatttcaggtaatgctgaaaatgaagagcaaacatgttgcaggaacaataacaaaaaagaacaagagtaagttactaatagc |
38269629 |
T |
|
| Q |
401 |
ttcaca |
406 |
Q |
| |
|
|||||| |
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| T |
38269630 |
ttcaca |
38269635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 225 - 391
Target Start/End: Original strand, 38308234 - 38308401
Alignment:
| Q |
225 |
ttacatacatcgaacaggacatgtaaatttttctttcagaaattgacattagacagaattttctacatgttcattcattgacaaggcttgcaaacat--t |
322 |
Q |
| |
|
|||||||||| ||||| |||| ||||| |||||| ||| ||| |||||| | | |||||| |||||||| ||||| |||||| |||||||||||| |
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| T |
38308234 |
ttacatacatagaacatgacaggtaaaattttctatcaaaaactgacataaaaaagaattccctacatgtccattccatgacaatgcttgcaaacataaa |
38308333 |
T |
|
| Q |
323 |
tcaggtaatgctgaaaatgaagagcaaacatgttgcaggaacaataacaaaaaagaacaagagtaagtt |
391 |
Q |
| |
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|||||||||||||||| | ||||| ||| ||||||||||||||| |||||| ||||||||||| |||| |
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| T |
38308334 |
acaggtaatgctgaaaacgtagagc-aacttgttgcaggaacaattacaaaatagaacaagagtgagtt |
38308401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 38308060 - 38308195
Alignment:
| Q |
7 |
gagaaattgtgaatgtagatggttttataggttcctgc-------agccaagaactacttgctaagggcagtgaattactcaaacgcacccgtaacggta |
99 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| |||||| |
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| T |
38308060 |
gagaaattgtgaatgcagatagttttataggttcctgcaggctgcagccaagaactacttgctaacggctatgaattactcaaacgcaccc-taacgg-- |
38308156 |
T |
|
| Q |
100 |
cattatcattattaccaattacaaattatgctattgagacta |
141 |
Q |
| |
|
||||||||||| |||||||||||| | ||||| |||||| |
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|
| T |
38308157 |
---tatcattattatcaattacaaattgttctattaagacta |
38308195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 162 - 257
Target Start/End: Original strand, 38279282 - 38279377
Alignment:
| Q |
162 |
aaaacaattaaatcctgttttggtgataactgcaggtgatctacactggaaaatagtttctgtttacatacatcgaacaggacatgtaaatttttc |
257 |
Q |
| |
|
||||||||||||| | ||||||| |||| ||||||||||| ||||| |||||||||||||||||||||||||||| ||||| |||||| |||| |
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| T |
38279282 |
aaaacaattaaattccattttggttgtaaccgcaggtgatctgcactgaaaaatagtttctgtttacatacatcgaattggacaggtaaatatttc |
38279377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 5 - 141
Target Start/End: Complemental strand, 8862288 - 8862151
Alignment:
| Q |
5 |
tggagaaattgtgaatgtagatggttttataggttcctgcagccaagaactacttgctaagggcagtgaattactcaaacgcacccgtaacggta-catt |
103 |
Q |
| |
|
||||||||||||||||| | || ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | | | || |||| |
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| T |
8862288 |
tggagaaattgtgaatgcaaatagttttatgggttcctgcagccaagaactacttgctaacggcagtgaattactcaaacgcactcctgaagatatcatt |
8862189 |
T |
|
| Q |
104 |
atcattattaccaattacaaattatgctattgagacta |
141 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| |||||| |
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| T |
8862188 |
atcattattatcaattacaaattattctattaagacta |
8862151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 5 - 141
Target Start/End: Original strand, 36828028 - 36828165
Alignment:
| Q |
5 |
tggagaaattgtgaatgtagatggttttataggttcctgcagccaagaactacttgctaagggcagtgaattactcaaacgcacccgtaacggta-catt |
103 |
Q |
| |
|
||||||||||||||||| | || ||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | | ||| || |||| |
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|
| T |
36828028 |
tggagaaattgtgaatgcaaatagttttatgggttcttgcagccaagaactacttgctaacggcagtgaattactcaaacgcactcctgacgatatcatt |
36828127 |
T |
|
| Q |
104 |
atcattattaccaattacaaattatgctattgagacta |
141 |
Q |
| |
|
|||||||||| |||||||||||||| |||| |||||| |
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| T |
36828128 |
atcattattatcaattacaaattattttattaagacta |
36828165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 384
Target Start/End: Original strand, 36828204 - 36828367
Alignment:
| Q |
225 |
ttacatacatcgaacaggacatgtaaatttttctttcagaaattgacattagacagaattttctacatgttcattcattgacaaggcttgcaaacatt-- |
322 |
Q |
| |
|
||||||||| |||||||| | ||||| |||||| | ||||| |||| | | |||||| |||||||| ||||| ||||||||||| ||||||| |
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| T |
36828204 |
ttacatacagagaacaggaaaggtaaaattttctaccgaaaattaacataaaaaagaattccctacatgtccattccatgacaaggcttacaaacataac |
36828303 |
T |
|
| Q |
323 |
---tcaggtaatgctgaaaatgaagagcaaacatgttgcaggaacaataacaaaaaagaacaaga |
384 |
Q |
| |
|
||||||||||||||||| ||| ||| ||| ||||||||||||||| || ||||||||||||| |
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|
| T |
36828304 |
atctcaggtaatgctgaaaacgaatagcgaacttgttgcaggaacaatcac-aaaaagaacaaga |
36828367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 5 - 134
Target Start/End: Original strand, 45033962 - 45034091
Alignment:
| Q |
5 |
tggagaaattgtgaatgtagatggttttataggttcctgcagccaagaactacttgctaagggcagtgaattactcaaacgcacccgtaacggta-catt |
103 |
Q |
| |
|
||||||||||||||||| | || ||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| | | ||| || |||| |
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| T |
45033962 |
tggagaaattgtgaatgcaaatagttttat-ggttcctgcagtcaagaactacttgctaacggcagcgaattactcaaacgcactcatgacgatatcatt |
45034060 |
T |
|
| Q |
104 |
atcattattaccaattacaaattatgctatt |
134 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| |
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|
| T |
45034061 |
atcattattatcaattacaaattattctatt |
45034091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 310 - 389
Target Start/End: Complemental strand, 31706502 - 31706423
Alignment:
| Q |
310 |
gcttgcaaacatttcaggtaatgctgaaaatgaagagcaaacatgttgcaggaacaataacaaaaaagaacaagagtaag |
389 |
Q |
| |
|
||||||| |||||||||| |||||||||||||| |||| ||||||||||||||| || ||||||||||| ||||||||| |
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|
| T |
31706502 |
gcttgcattcatttcaggtgatgctgaaaatgaaaagcagacatgttgcaggaaccattacaaaaaagaaaaagagtaag |
31706423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 195 - 256
Target Start/End: Complemental strand, 31706620 - 31706559
Alignment:
| Q |
195 |
aggtgatctacactggaaaatagtttctgtttacatacatcgaacaggacatgtaaattttt |
256 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||| || || |||| ||||| |
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|
| T |
31706620 |
aggtgatcttcactggaaaatagtttctgtttatatacatcgaaccggccaggtaatttttt |
31706559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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