View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3277_low_12 (Length: 438)

Name: NF3277_low_12
Description: NF3277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3277_low_12
NF3277_low_12
[»] chr4 (7 HSPs)
chr4 (163-412)||(49583037-49583286)
chr4 (1-162)||(49583343-49583504)
chr4 (170-295)||(5198998-5199124)
chr4 (203-287)||(4848615-4848699)
chr4 (163-240)||(15522606-15522683)
chr4 (272-341)||(29866154-29866223)
chr4 (76-109)||(49588574-49588607)
[»] chr5 (3 HSPs)
chr5 (228-349)||(37247603-37247723)
chr5 (276-319)||(27983524-27983567)
chr5 (203-302)||(31898075-31898172)
[»] chr2 (1 HSPs)
chr2 (272-349)||(5430280-5430357)
[»] chr8 (2 HSPs)
chr8 (203-294)||(7411339-7411429)
chr8 (231-299)||(3424305-3424372)
[»] chr6 (2 HSPs)
chr6 (226-301)||(6134221-6134296)
chr6 (237-297)||(2721839-2721899)
[»] chr1 (6 HSPs)
chr1 (222-342)||(26828549-26828669)
chr1 (281-353)||(34664919-34664991)
chr1 (182-250)||(35811949-35812017)
chr1 (163-212)||(16424901-16424950)
chr1 (278-314)||(14081707-14081743)
chr1 (203-243)||(32900378-32900418)


Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 163 - 412
Target Start/End: Complemental strand, 49583286 - 49583037
Alignment:
Q  163 aagaaataaattcattactaaattatgaaaataattacactatgaaattaagaagaaataatgagaaattaagctattatacaatataagatagtataat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583286 aagaaataaattcattactaaattatgaaaataattacactatgaaattaagaagaaataatgagaaattaagctattatacaatataagatagtataat 49583187  T
Q  263 taatttttataagaattatgcaatgttgtgattaattcacgctgcgacaaccacaatgcgcaatgcaacatctgtaacaatcgaaattgcgacatcttaa 362  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583186 taatttttataagacttatgcaatgttgtgattaattcacgctgcgacaaccacaatgcgcaatgcaacatctgtaacaatcgaaattgcgacatcttaa 49583087  T
Q  363 cgcaaccacaaacttgactgagacctttatttaaaatcttggatatgata 412  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  49583086 cgcaaccacaaacttgactgagacctttatttaaaaccttggatatgata 49583037  T

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Target: chr4; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 49583504 - 49583343
Alignment:
Q  1 cctcaacagatgtttccggatcatcaaaaacaccatatttaatggaccacggaagtgattgttcatctggttcagctgcattcacctgtccaaaaattta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583504 cctcaacagatgtttccggatcatcaaaaacaccatatttaatggaccacggaagtgattgttcatctggttcagctgcattcacctgtccaaaaattta 49583405  T
Q  101 aatatatttaaagggagcatatatatacaatagttggttttaaggcaaattgagtttgctct 162  Q
    |||||||||||||  ||||||||| |||||||||||||||||||| ||||||||||||||||    
T  49583404 aatatatttaaagatagcatatatttacaatagttggttttaaggaaaattgagtttgctct 49583343  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 170 - 295
Target Start/End: Complemental strand, 5199124 - 5198998
Alignment:
Q  170 aaattcattactaaattatgaaaataattacacta-tgaaattaagaagaaataatgagaaattaagctattatacaatataagatagtataattaattt 268  Q
    ||||||||||| |||||||||||| ||||| | || |||||||| ||||||| |||||||||||||| ||||||||| |||| |||| ||||| ||||||    
T  5199124 aaattcattacaaaattatgaaaagaattatagtaatgaaattatgaagaaacaatgagaaattaagttattatacattatatgataatataaataattt 5199025  T
Q  269 ttataagaattatgcaatgttgtgatt 295  Q
    | |||| | || ||||||||| |||||    
T  5199024 taataatatttgtgcaatgttatgatt 5198998  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 203 - 287
Target Start/End: Original strand, 4848615 - 4848699
Alignment:
Q  203 tatgaaattaagaagaaataatgagaaattaagctattatacaatataagatagtataattaatttttataagaattatgcaatg 287  Q
    |||||||||| ||||||| |||||||||||||| ||||||||| |||| |||||||||| ||||||| |||| | || |||||||    
T  4848615 tatgaaattatgaagaaacaatgagaaattaagttattatacattatatgatagtataaataattttaataatatttgtgcaatg 4848699  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 15522683 - 15522606
Alignment:
Q  163 aagaaataaattcattactaaattatgaaaataattacactatgaaattaagaagaaataatgagaaattaagctatt 240  Q
    |||||| |||||||||||  ||| ||||||||||||||| ||| |||||| ||| ||| ||| |||||||||| ||||    
T  15522683 aagaaacaaattcattacataataatgaaaataattacattataaaattatgaataaacaataagaaattaagttatt 15522606  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 341
Target Start/End: Original strand, 29866154 - 29866223
Alignment:
Q  272 taagaattatgcaatgttgtgattaattcacgctgcgacaaccacaatgcgcaatgcaacatctgtaaca 341  Q
    ||||| || |||||||||||||||||||||| |  |||||||||||||  | || |||||||| ||||||    
T  29866154 taagatttgtgcaatgttgtgattaattcacaccacgacaaccacaatctgtaacgcaacatcagtaaca 29866223  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 49588607 - 49588574
Alignment:
Q  76 ctgcattcacctgtccaaaaatttaaatatattt 109  Q
    ||||||||||||||||||| ||||||||||||||    
T  49588607 ctgcattcacctgtccaaatatttaaatatattt 49588574  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 349
Target Start/End: Original strand, 37247603 - 37247723
Alignment:
Q  228 aaattaagctattatacaatataagatagtataattaatttttataagaattatgcaatgttgtgattaattcacgctgcgacaaccacaatgcgcaatg 327  Q
    |||||||| ||||||||| |||| ||||| |||| | ||||  |||| | || |||| ||||||||||||||||| | ||||||||||||||  | || |    
T  37247603 aaattaagttattatacactatatgatagaataaatgattta-ataatatttgtgcattgttgtgattaattcacaccgcgacaaccacaatctgtaacg 37247701  T
Q  328 caacatctgtaacaatcgaaat 349  Q
    ||||||| |||||| |||||||    
T  37247702 caacatccgtaacactcgaaat 37247723  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 319
Target Start/End: Complemental strand, 27983567 - 27983524
Alignment:
Q  276 aattatgcaatgttgtgattaattcacgctgcgacaaccacaat 319  Q
    |||| |||||||||||||||||||||| ||||||| ||||||||    
T  27983567 aattgtgcaatgttgtgattaattcaccctgcgacgaccacaat 27983524  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 302
Target Start/End: Original strand, 31898075 - 31898172
Alignment:
Q  203 tatgaaattaagaagaaataatgagaaattaagctattatacaatataagatagtataattaatttttataagaattatgcaatgttgtgattaattcac 302  Q
    |||||||||| ||| ||| | |||||||||||||||||| ||| |||  ||||||||||  |||||| |  | | ||||| ||| |||||||||||||||    
T  31898075 tatgaaattatgaacaaacagtgagaaattaagctattaaacattat--gatagtataaagaattttaaccacatttatggaatattgtgattaattcac 31898172  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 272 - 349
Target Start/End: Original strand, 5430280 - 5430357
Alignment:
Q  272 taagaattatgcaatgttgtgattaattcacgctgcgacaaccacaatgcgcaatgcaacatctgtaacaatcgaaat 349  Q
    ||||| || |||||| ||||||||||||||| | ||||||||||||||  | ||||||||||| ||||||| ||||||    
T  5430280 taagagttgtgcaatattgtgattaattcacaccgcgacaaccacaatctgtaatgcaacatccgtaacaaccgaaat 5430357  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 294
Target Start/End: Complemental strand, 7411429 - 7411339
Alignment:
Q  203 tatgaaattaagaagaaataatgagaaattaagctattatacaatataagatagtataattaatttttataagaattatgcaatgttgtgat 294  Q
    |||||||  ||||||||| ||| |||||||||| ||||||||| |||||||||  |||| ||||||| |||||| || || |||||||||||    
T  7411429 tatgaaaagaagaagaaacaat-agaaattaagttattatacattataagatatcataaataattttaataagatttgtgaaatgttgtgat 7411339  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 299
Target Start/End: Complemental strand, 3424372 - 3424305
Alignment:
Q  231 ttaagctattatacaatataagatagtataattaatttttataagaattatgcaatgttgtgattaatt 299  Q
    ||||| ||||||||| |||| |||||||||| ||||||||||||  ||| |||| ||||||||||||||    
T  3424372 ttaagttattatacattatatgatagtataaataatttttataa-tattgtgcattgttgtgattaatt 3424305  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 301
Target Start/End: Complemental strand, 6134296 - 6134221
Alignment:
Q  226 agaaattaagctattatacaatataagatagtataattaatttttataagaattatgcaatgttgtgattaattca 301  Q
    |||||| ||| ||||||||| |||  |||||||||| | ||||| |||||| || |||||||||||||||||||||    
T  6134296 agaaatcaagttattatacattatttgatagtataaatgattttaataagatttgtgcaatgttgtgattaattca 6134221  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 297
Target Start/End: Original strand, 2721839 - 2721899
Alignment:
Q  237 tattatacaatataagatagtataattaatttttataagaattatgcaatgttgtgattaa 297  Q
    ||||||||| |||| |||||||||| ||||||| |||| | |||||||| |||||||||||    
T  2721839 tattatacattatatgatagtataaataattttaataatatttatgcaaggttgtgattaa 2721899  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 342
Target Start/End: Original strand, 26828549 - 26828669
Alignment:
Q  222 aatgagaaattaagctattatacaatataagatagtataattaatttttataagaattatgcaatgttgtgattaattcacgctgcgacaaccacaatgc 321  Q
    |||||||||||||| | ||  ||| |||| | |||||||| ||| ||| |||| | || ||||||||||||||||||| || | |||||||  |||||      
T  26828549 aatgagaaattaagttttttcacattatatgttagtataaataagtttaataaaatttgtgcaatgttgtgattaatttacaccgcgacaataacaatct 26828648  T
Q  322 gcaatgcaacatctgtaacaa 342  Q
    | |||||||||||| ||||||    
T  26828649 gtaatgcaacatctataacaa 26828669  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 353
Target Start/End: Original strand, 34664919 - 34664991
Alignment:
Q  281 tgcaatgttgtgattaattcacgctgcgacaaccacaatgcgcaatgcaacatctgtaacaatcgaaattgcg 353  Q
    ||||||||||| |||||||||  | | |||||||||||| |  ||||||||||| ||||||| ||||||||||    
T  34664919 tgcaatgttgtaattaattcataccgtgacaaccacaatccataatgcaacatccgtaacaaccgaaattgcg 34664991  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 250
Target Start/End: Original strand, 35811949 - 35812017
Alignment:
Q  182 aaattatgaaaataattacactatgaaattaagaagaaataatgagaaattaagctattatacaatata 250  Q
    |||||||  ||| ||||||| |||| ||||||||||||| | |||||||||||| ||||||||| ||||    
T  35811949 aaattattgaaagaattacattatggaattaagaagaaacagtgagaaattaagttattatacattata 35812017  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 16424950 - 16424901
Alignment:
Q  163 aagaaataaattcattactaaattatgaaaataattacactatgaaatta 212  Q
    |||||| ||||||||||| |||||| |||||||||| || ||||||||||    
T  16424950 aagaaacaaattcattacaaaattaagaaaataatttcattatgaaatta 16424901  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 14081743 - 14081707
Alignment:
Q  278 ttatgcaatgttgtgattaattcacgctgcgacaacc 314  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  14081743 ttatgcaatgttgtgattaatgcacactgcgacaacc 14081707  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 32900378 - 32900418
Alignment:
Q  203 tatgaaattaagaagaaataatgagaaattaagctattata 243  Q
    |||||||||| ||||||| |||||||||||||| |||||||    
T  32900378 tatgaaattatgaagaaacaatgagaaattaagttattata 32900418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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