View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3277_low_15 (Length: 360)

Name: NF3277_low_15
Description: NF3277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3277_low_15
NF3277_low_15
[»] chr2 (4 HSPs)
chr2 (8-344)||(43874637-43874973)
chr2 (8-335)||(43863478-43863808)
chr2 (8-344)||(43866953-43867292)
chr2 (8-274)||(38989526-38989792)
[»] chr3 (12 HSPs)
chr3 (12-341)||(777614-777946)
chr3 (93-220)||(476508-476635)
chr3 (90-219)||(7033645-7033774)
chr3 (12-209)||(481452-481649)
chr3 (93-221)||(8032801-8032932)
chr3 (78-206)||(1186729-1186860)
chr3 (78-206)||(1204793-1204924)
chr3 (78-206)||(1304166-1304297)
chr3 (86-143)||(7029644-7029701)
chr3 (78-272)||(5360509-5360706)
chr3 (93-144)||(13490423-13490474)
chr3 (105-137)||(13485474-13485506)
[»] chr4 (1 HSPs)
chr4 (8-274)||(52187240-52187506)
[»] scaffold0438 (1 HSPs)
scaffold0438 (93-221)||(5783-5914)
[»] chr8 (3 HSPs)
chr8 (93-221)||(26291402-26291533)
chr8 (93-221)||(26304659-26304790)
chr8 (93-221)||(26338014-26338145)
[»] chr1 (1 HSPs)
chr1 (98-218)||(14288419-14288539)
[»] chr6 (1 HSPs)
chr6 (176-214)||(34800051-34800089)
[»] chr5 (1 HSPs)
chr5 (99-143)||(7022590-7022634)


Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 8 - 344
Target Start/End: Original strand, 43874637 - 43874973
Alignment:
Q  8 aagcaaaggtttgaagacttggagcatatagctcgagtccaaaataggttccgatattggtcgcaaggtcgcaatcatccataagtatagttaaattgac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43874637 aagcaaaggtttgaagacttggagcatatagctcgagtccaaaataggttccgatattggtcgcaaggtcgcaatcatccataagtatagttaaattgac 43874736  T
Q  108 aagcttggtacttgatatgcaaaggttttgtgcatcctgaactaaacaactgtcaatgatcaaacgattcaacatgttaaatgttgaaaagggctcgaca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43874737 aagcttggtacttgatatgcaaaggttttgtgcatcctgaactaaacaactgtcaatgatcaaacgattcaacatgttaaatgttgaaaagggctcgaca 43874836  T
Q  208 cagccatcatcatttcgatgcaaggcaatgtactttaaagacaagctggttaatgttggcaaattcaannnnnnnggaaatatttgtatccgaccaaaca 307  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  43874837 cagccatcatcacttcaatgcaaggcaatgtactttaaagacaagctggttaatgttggcaaattcaatttttttggaaatatttgtatccgaccaaaca 43874936  T
Q  308 atatatcgtaaccagaaagattaagagaagttaatgt 344  Q
    |||||||||||||||||||||||||||||||||||||    
T  43874937 atatatcgtaaccagaaagattaagagaagttaatgt 43874973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 335
Target Start/End: Original strand, 43863478 - 43863808
Alignment:
Q  8 aagcaaaggtttgaagacttggagcatatagctcgagtccaaaataggttccgatattggtcgcaaggtcgcaatcatccataagtatagttaaattgac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43863478 aagcaaaggtttgaagacttggagcatatagctcgagtccaaaataggttccgatattgatcgcaaggtcgcaatcatccataagtatagttaaattgac 43863577  T
Q  108 aagcttggtacttgatatgcaaaggttttgtgcatcctgaactaaacaactgtcaatgatcaaacgattcaacatgttaaatgttgaaaagggctcgac- 206  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||| || |||||||||||     
T  43863578 aagcctggtacttgatatgcaaaggttttgtgcatcctgaactatacaactgtcaatgatcaaacgatccaacatgttatatgtcgagaagggctcgacg 43863677  T
Q  207 --acagccatcatcatttcgatgcaaggcaatgtactttaaagacaagctggttaatgttggcaaattcaannnnnnnggaaatatttgtatccgaccaa 304  Q
      ||| ||||||||| | ||||| |||| || |||||||||||||||| ||||||||| ||||||||||||       ||||||||| ||||| ||||||    
T  43863678 agacaaccatcatcactgcgatgaaaggaaaagtactttaaagacaaggtggttaatgctggcaaattcaaatgttttggaaatattggtatctgaccaa 43863777  T
Q  305 acaatatatcgtaaccagaaagattaagaga 335  Q
    |||||||||||||||||||||||| ||||||    
T  43863778 acaatatatcgtaaccagaaagataaagaga 43863808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 344
Target Start/End: Original strand, 43866953 - 43867292
Alignment:
Q  8 aagcaaaggtttgaagacttggagcatatagctcgagtccaaaataggttccgatattggtcgcaaggtcgcaatcatccataagtatagttaaattgac 107  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||  | | || ||||||| ||||| |||||||||||||||    
T  43866953 aagcaaaggtttgaagacttggagcatacagctcgagtccaaaataggttccgataatggtcttaggctcacaatcatgcataattatagttaaattgac 43867052  T
Q  108 aagcttggtacttgatatgcaaaggttttgtgcatcctgaactaaacaactgtcaatgatcaaacgattcaacatgttaaatgttgaaaagggct---cg 204  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||   ||    
T  43867053 aagcttggtacttgatatgcaaaggttttgtgcatcctgaactatacaactgtcaatgatcaaacgattcaacatgttaaatgtcgaaaagggctcgacg 43867152  T
Q  205 acacagccatcatcatttcgatgcaaggcaatgtactttaaagacaagctggttaatgttggcaaattcaannnnnnnggaaatatttgtatccgaccaa 304  Q
    ||||| ||| ||||| | ||||| |||| || |||||||||||||||||||||||||| ||||| ||| ||       ||||||||| ||||| ||||||    
T  43867153 acacaaccagcatcactgcgatgaaaggaaaagtactttaaagacaagctggttaatgctggcagatttaaattttttggaaatattggtatctgaccaa 43867252  T
Q  305 acaatatatcgtaaccagaaagattaagagaagttaatgt 344  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  43867253 acaatatatcgtaaccagaaagattaagagacgttaatgt 43867292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 8 - 274
Target Start/End: Complemental strand, 38989792 - 38989526
Alignment:
Q  8 aagcaaaggtttgaagacttggagcatatagctcgagtccaaaataggttccgatattggtcgcaaggtcgcaatcatccataagtatagttaaattgac 107  Q
    |||||||| | ||||||||||||||||||||||||| |||||||||| |||| ||||  ||| || |  |  || |   |||||||||| ||||||||||    
T  38989792 aagcaaagttatgaagacttggagcatatagctcgattccaaaatagattccaatatatgtctcaggaacagaagcccacataagtatacttaaattgac 38989693  T
Q  108 aagcttggtacttgatatgcaaaggttttgtgcatcctgaactaaacaactgtcaatgatcaaacgattcaacatgttaaatgttgaaaagggctcgaca 207  Q
    |||||||||||||||||||||||| |||||||| ||| |||||| ||||| |||||||||||||| ||||||||| |||||||| ||||||||||| |||    
T  38989692 aagcttggtacttgatatgcaaagattttgtgcgtccagaactatacaacagtcaatgatcaaactattcaacattttaaatgtggaaaagggctcaaca 38989593  T
Q  208 cagccatcatcatttcgatgcaaggcaatgtactttaaagacaagctggttaatgttggcaaattca 274  Q
    || |||| |||| |||||   ||||||| |||||||||||||||| ||||||||| |||||||||||    
T  38989592 caaccattatcacttcgagcaaaggcaaagtactttaaagacaagttggttaatgatggcaaattca 38989526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 12 - 341
Target Start/End: Original strand, 777614 - 777946
Alignment:
Q  12 aaaggtttgaagacttggagcatatagctcgagtccaaaataggttccgatattggtcgcaaggtcgcaatcatccataagtatagttaaattgacaagc 111  Q
    |||||| ||||||| ||||||||||||||||||| ||||||| |||||||||| |||| |||| || ||||||  |||||| ||||| ||| | |||||     
T  777614 aaaggtatgaagacatggagcatatagctcgagttcaaaataagttccgatataggtctcaagatcacaatcacacataaggatagtaaaactaacaagt 777713  T
Q  112 ttggtacttgatatgcaaaggttttgtgcatcctgaactaaacaactgtcaatgatcaaacgattcaacatgttaaatgttgaaaagggctcgacacagc 211  Q
    |||||||||||||||||||||||||||||||||  ||||| |||||  ||||||||||||| ||||||||| |||||||||||||| |||||||||||      
T  777714 ttggtacttgatatgcaaaggttttgtgcatccataactatacaacaatcaatgatcaaactattcaacattttaaatgttgaaaatggctcgacacaaa 777813  T
Q  212 c---atcatcatttcgatgcaaggcaatgtactttaaagacaagctggttaatgttggcaaattcaannnnnnnggaaatatttgtatccgaccaaacaa 308  Q
    |   |||||||   || || |||||||  ||||| | ||||||||| ||||||| ||| ||||||||       ||||||||  || |  ||||||||||    
T  777814 cattatcatcaccgcgctgaaaggcaaaatacttcagagacaagcttgttaatgctggtaaattcaaaaaatttggaaatatgagtttgtgaccaaacaa 777913  T
Q  309 tatatcgtaaccagaaagattaagagaagttaa 341  Q
    ||||| | ||||||||||||||||||| |||||    
T  777914 tatatggaaaccagaaagattaagagacgttaa 777946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 93 - 220
Target Start/End: Complemental strand, 476635 - 476508
Alignment:
Q  93 tatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcatcctgaactaaacaactgtcaatgatcaaacgattcaacatgttaaatgtt 192  Q
    |||||||||||||| ||||||||||||||| |||| |||||||||||||||| ||| || |||   |||||||||||||  ||||||||||||||||||     
T  476635 tatagttaaattgagaagcttggtacttgaaatgcgaaggttttgtgcatccagaattacacataagtcaatgatcaaagtattcaacatgttaaatgtg 476536  T
Q  193 gaaaagggctcgacacagccatcatcat 220  Q
    |||||||| ||||| || ||||||||||    
T  476535 gaaaaggggtcgacgcaaccatcatcat 476508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 90 - 219
Target Start/End: Complemental strand, 7033774 - 7033645
Alignment:
Q  90 aagtatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcatcctgaactaaacaactgtcaatgatcaaacgattcaacatgttaaat 189  Q
    ||||||||||||| | |||||||||| |||||||||||||||||||||||||||   ||| | |||||| ||||||||||||| ||| ||||| ||||||    
T  7033774 aagtatagttaaactaacaagcttgggacttgatatgcaaaggttttgtgcatcacaaaccatacaactatcaatgatcaaactatttaacattttaaat 7033675  T
Q  190 gttgaaaagggctcgacacagccatcatca 219  Q
     | ||||||||||||||||  |||||||||    
T  7033674 ttggaaaagggctcgacacgaccatcatca 7033645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 12 - 209
Target Start/End: Complemental strand, 481649 - 481452
Alignment:
Q  12 aaaggtttgaagacttggagcatatagctcgagtccaaaataggttccgatattggtcgcaagg-tcgcaatcatccataagtatagttaaattgacaag 110  Q
    |||||| |||| | |||||||||||| ||| | ||| |||||||||| || |||| || | ||| || | ||||| ||||  |||||||||| ||| |||    
T  481649 aaaggtatgaacagttggagcatataactcaattccgaaataggttctgaaattg-tccctaggatcaccatcatacatacatatagttaaactgagaag 481551  T
Q  111 cttggtacttgatatgcaaaggttttgtgcatcctgaactaaacaactgtcaatgatcaaacgattcaacatgttaaatgttgaaaagggctcgacaca 209  Q
    |||||||||||| |||||||||||| |||||||| ||| || ||| | |||||||||||||  || ||||||||||||||  |||||||| ||||||||    
T  481550 cttggtacttgaaatgcaaaggtttcgtgcatccagaagtacacagcagtcaatgatcaaagtatccaacatgttaaatgcggaaaaggggtcgacaca 481452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 93 - 221
Target Start/End: Original strand, 8032801 - 8032932
Alignment:
Q  93 tatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcatcctgaac---taaacaactgtcaatgatcaaacgattcaacatgttaaat 189  Q
    ||||||||||||||||||||||||| |||| |||| ||||||||||||||  | |||   || |||  ||||||||||||||  | ||||||||||||||    
T  8032801 tatagttaaattgacaagcttggtatttgaaatgcgaaggttttgtgcattgtcaacaagtacacatttgtcaatgatcaaagtagtcaacatgttaaat 8032900  T
Q  190 gttgaaaagggctcgacacagccatcatcatt 221  Q
    |  |||||||| |||||||| |||||||||||    
T  8032901 gcagaaaagggatcgacacaaccatcatcatt 8032932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 206
Target Start/End: Complemental strand, 1186860 - 1186729
Alignment:
Q  78 gcaatcatccataagtatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcat---cctgaactaaacaactgtcaatgatcaaacga 174  Q
    |||| ||| |||| ||||||||||||||| ||||||||||| ||| |||| ||||||||||||||   ||  || || ||| | |||||||||||||  |    
T  1186860 gcaaccatacatacgtatagttaaattgagaagcttggtacatgaaatgcgaaggttttgtgcattacccctaagtacacagcggtcaatgatcaaagta 1186761  T
Q  175 ttcaacatgttaaatgttgaaaagggctcgac 206  Q
    ||||||||||||||||| |||||||| |||||    
T  1186760 ttcaacatgttaaatgtggaaaaggggtcgac 1186729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 206
Target Start/End: Complemental strand, 1204924 - 1204793
Alignment:
Q  78 gcaatcatccataagtatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcat---cctgaactaaacaactgtcaatgatcaaacga 174  Q
    |||| ||| |||| ||||||||||||||| ||||||||||| ||| |||| ||||||||||||||   ||  || || ||| | |||||||||||||  |    
T  1204924 gcaaccatacatacgtatagttaaattgagaagcttggtacatgaaatgcgaaggttttgtgcattacccctaagtacacagcggtcaatgatcaaagta 1204825  T
Q  175 ttcaacatgttaaatgttgaaaagggctcgac 206  Q
    ||||||||||||||||| |||||||| |||||    
T  1204824 ttcaacatgttaaatgtggaaaaggggtcgac 1204793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 206
Target Start/End: Original strand, 1304166 - 1304297
Alignment:
Q  78 gcaatcatccataagtatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcat---cctgaactaaacaactgtcaatgatcaaacga 174  Q
    |||| ||| |||| ||||||||||||||| ||||||||||| ||| |||| ||||||||||||||   ||  || || ||| | |||||||||||||  |    
T  1304166 gcaaccatacatacgtatagttaaattgagaagcttggtacatgaaatgcgaaggttttgtgcattacccctaagtacacagcggtcaatgatcaaagta 1304265  T
Q  175 ttcaacatgttaaatgttgaaaagggctcgac 206  Q
    ||||||||||||||||| |||||||| |||||    
T  1304266 ttcaacatgttaaatgtggaaaaggggtcgac 1304297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 7029701 - 7029644
Alignment:
Q  86 ccataagtatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcatc 143  Q
    ||||||||| | ||||||| |||||||||| |||||||||||||||||||||||||||    
T  7029701 ccataagtaaacttaaattaacaagcttgggacttgatatgcaaaggttttgtgcatc 7029644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 272
Target Start/End: Original strand, 5360509 - 5360706
Alignment:
Q  78 gcaatcatccataagtatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcat---cctgaactaaacaactgtcaatgatcaaacga 174  Q
    |||||||| |||  ||||||||||||| ||| ||||||||||||| || | | ||||||||||||   |  ||| || ||| | ||||||| |||||  |    
T  5360509 gcaatcatacatttgtatagttaaattaacaggcttggtacttgaaatacgatggttttgtgcattagcaagaagtacacagcggtcaatgctcaaagta 5360608  T
Q  175 ttcaacatgttaaatgttgaaaagggctcgacacagccatcatcatttcgatgcaaggcaatgtactttaaagacaagctggttaatgttggcaaatt 272  Q
      |||||||||||||   |||||||| |||||| | ||||||||||| ||||  ||||||| |  ||||| ||||||  ||||||||| ||| |||||    
T  5360609 gacaacatgttaaattcggaaaaggggtcgacaaaaccatcatcattgcgataaaaggcaaggctctttagagacaaagtggttaatgctgggaaatt 5360706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 13490423 - 13490474
Alignment:
Q  93 tatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcatcc 144  Q
    ||||||||| | |||||| |||||||||||||||||||||||||| ||||||    
T  13490423 tatagttaattggacaagtttggtacttgatatgcaaaggttttgcgcatcc 13490474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 13485474 - 13485506
Alignment:
Q  105 gacaagcttggtacttgatatgcaaaggttttg 137  Q
    |||||||||||||||||||||||||||||||||    
T  13485474 gacaagcttggtacttgatatgcaaaggttttg 13485506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 8 - 274
Target Start/End: Complemental strand, 52187506 - 52187240
Alignment:
Q  8 aagcaaaggtttgaagacttggagcatatagctcgagtccaaaataggttccgatattggtcgcaaggtcgcaatcatccataagtatagttaaattgac 107  Q
    |||||||||| ||||||||||||||||||||||| | |||||||||| |||| | || |||| || |  |  ||||   |||||||||| ||||||||||    
T  52187506 aagcaaaggtatgaagacttggagcatatagctcaattccaaaatagattccaacataggtctcaggaacagaatcccacataagtatacttaaattgac 52187407  T
Q  108 aagcttggtacttgatatgcaaaggttttgtgcatcctgaactaaacaactgtcaatgatcaaacgattcaacatgttaaatgttgaaaagggctcgaca 207  Q
    ||| |||| ||||||||||||||| |||||||| ||  |||||| ||||| |||||||| |||||  |||||||| ||||| || |||||||||||||||    
T  52187406 aagtttggcacttgatatgcaaagtttttgtgcgtcgagaactatacaacagtcaatgaccaaactgttcaacattttaaacgtggaaaagggctcgaca 52187307  T
Q  208 cagccatcatcatttcgatgcaaggcaatgtactttaaagacaagctggttaatgttggcaaattca 274  Q
    || |||||||||  ||||   ||| ||| |||||||| ||||||| ||||||||| |||||||||||    
T  52187306 caaccatcatcacctcgacaaaagccaaagtactttagagacaagttggttaatgctggcaaattca 52187240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 221
Target Start/End: Complemental strand, 5914 - 5783
Alignment:
Q  93 tatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcatcctgaac---taaacaactgtcaatgatcaaacgattcaacatgttaaat 189  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||  | |||   || |||  ||||||||||||||  | |||||||||| |||    
T  5914 tatagttaaattgacaagcttggtacttgaaatgcgaaggttttgtgcattgtcaacaagtacacatttgtcaatgatcaaagtagtcaacatgttgaat 5815  T
Q  190 gttgaaaagggctcgacacagccatcatcatt 221  Q
    || ||||| || || ||||| |||||||||||    
T  5814 gtggaaaaaggatcaacacaaccatcatcatt 5783  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 221
Target Start/End: Complemental strand, 26291533 - 26291402
Alignment:
Q  93 tatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcatcctgaac---taaacaactgtcaatgatcaaacgattcaacatgttaaat 189  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||  | |||   || |||  ||||||||||||||  | |||||||||| |||    
T  26291533 tatagttaaattgacaagcttggtacttgaaatgcgaaggttttgtgcattgtcaacaagtacacatttgtcaatgatcaaagtagtcaacatgttgaat 26291434  T
Q  190 gttgaaaagggctcgacacagccatcatcatt 221  Q
    || ||||| || || ||||| |||||||||||    
T  26291433 gtggaaaaaggatcaacacaaccatcatcatt 26291402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 221
Target Start/End: Complemental strand, 26304790 - 26304659
Alignment:
Q  93 tatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcatcctgaac---taaacaactgtcaatgatcaaacgattcaacatgttaaat 189  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||  | |||   || |||  ||||||||||||||  | |||||||||| |||    
T  26304790 tatagttaaattgacaagcttggtacttgaaatgcgaaggttttgtgcattgtcaacaagtacacatttgtcaatgatcaaagtagtcaacatgttgaat 26304691  T
Q  190 gttgaaaagggctcgacacagccatcatcatt 221  Q
    || ||||| || || ||||| |||||||||||    
T  26304690 gtggaaaaaggatcaacacaaccatcatcatt 26304659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 221
Target Start/End: Complemental strand, 26338145 - 26338014
Alignment:
Q  93 tatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcatcctgaac---taaacaactgtcaatgatcaaacgattcaacatgttaaat 189  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||  | |||   || |||  ||||||||||||||  | |||||||||| |||    
T  26338145 tatagttaaattgacaagcttggtacttgaaatgcgaaggttttgtgcattgtcaacaagtacacatttgtcaatgatcaaagtagtcaacatgttgaat 26338046  T
Q  190 gttgaaaagggctcgacacagccatcatcatt 221  Q
    || ||||| || || ||||| |||||||||||    
T  26338045 gtggaaaaaggatcaacacaaccatcatcatt 26338014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 218
Target Start/End: Original strand, 14288419 - 14288539
Alignment:
Q  98 ttaaattgacaagcttggtacttgatatgcaaaggttttgtgcatcctgaactaaacaactgtcaatgatcaaacgattcaacatgttaaatgttgaaaa 197  Q
    ||||||| |||||  ||||||| |||||||| |||||||||  ||||  ||||  |||  | ||||||||||||  ||||||| ||||| ||| ||||||    
T  14288419 ttaaattaacaagtgtggtactagatatgcagaggttttgtttatccacaacttgacatttttcaatgatcaaagtattcaacttgttacatgatgaaaa 14288518  T
Q  198 gggctcgacacagccatcatc 218  Q
     ||||| |||| |||||||||    
T  14288519 aggctcaacacggccatcatc 14288539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 34800051 - 34800089
Alignment:
Q  176 tcaacatgttaaatgttgaaaagggctcgacacagccat 214  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  34800051 tcaacatgttacatgttgaaaagggctcaacacagccat 34800089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 7022634 - 7022590
Alignment:
Q  99 taaattgacaagcttggtacttgatatgcaaaggttttgtgcatc 143  Q
    |||| |||||||  || ||||||||||||||||||||||||||||    
T  7022634 taaagtgacaagtgtgatacttgatatgcaaaggttttgtgcatc 7022590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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