View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3277_low_16 (Length: 356)
Name: NF3277_low_16
Description: NF3277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3277_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 330
Target Start/End: Complemental strand, 54076637 - 54076303
Alignment:
| Q |
10 |
gcacagaggggtggatttcatttatgaagaagcaccaaatgaggtgcagtccaaagaagaaatctgcctacactagtatcaa----ctataggggtccaa |
105 |
Q |
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| T |
54076637 |
gcacagaggggtggatttcatttatgaagaagcaccaaatcaggtgcagtccaaagaagaaatctgcctacactagtatcaatcaactataggggtccaa |
54076538 |
T |
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| Q |
106 |
aatggaacaatgaagacaacaaaaattctattccgtgcattnnnnnnn-gtggaatagagaaacagaatgtaagagagcactataatagttttcaactgt |
204 |
Q |
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| T |
54076537 |
aatggaacaatgaagacaacaaaaattctattccttgcattaaaaaaaagtggaatagaaaaacagaatgtaagagagcactataatagttttcaactgt |
54076438 |
T |
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| Q |
205 |
tcctgtgtatgtatagtattgatccatccat----gtttacttttgttgagaatctgtcccctccgaatcaaaaatctatgtaagaagaagaagaa---t |
297 |
Q |
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| T |
54076437 |
tcctgtgtatgtatagtattgatccatccatccatgtttacttttgttgagaatctgtcccctccgaatcaaaaatctatgtaagaagaagaagaagaat |
54076338 |
T |
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| Q |
298 |
caagc--aatcaaataaaataaattctcatctagt |
330 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
54076337 |
caaggggaatcaaataaaataaattctcatctagt |
54076303 |
T |
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