View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3277_low_18 (Length: 333)
Name: NF3277_low_18
Description: NF3277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3277_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 36904212 - 36903995
Alignment:
| Q |
1 |
aaatcgaagagaaaagtgtgaaaaatgaaaggggaaagcacaccggagttacgtcggaagtggttgggtcgccgaaaaatggcgtttgaggag-gagcag |
99 |
Q |
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| T |
36904212 |
aaatcgaagagaaaagtgtgaaaaatgaaaggggaaagcacaccggagttacgtcggaagtggttgggtcgccgaaaaatggcgtttgaggagagagaag |
36904113 |
T |
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| Q |
100 |
agagaacaccggcaaatcctcattgtggaatttgctccagagaagagagaacacttagacaattgctgcaggggtaattcaccatgttactagattaatt |
199 |
Q |
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| T |
36904112 |
agagaacaccggcaaatcctcattgtggaatttgctccagagaagagagaacacttagacaattgctgcaggggtaattcaccatgttactagattaatt |
36904013 |
T |
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| Q |
200 |
ggcaactaatatcatatg |
217 |
Q |
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| T |
36904012 |
gccaactaatatcatatg |
36903995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 28105865 - 28105952
Alignment:
| Q |
5 |
cgaagagaaaagtgtgaaaaatgaaaggggaaagcacaccggagttacgtcggaagtggttgggtcgccgaaaaatggcgtttgagga |
92 |
Q |
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| T |
28105865 |
cgaagagaaaagtgtgaaaaataaagggggaaatcacaccggagttacgccggacgtggttgggtcgccggaaaatggcgtttgagga |
28105952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 32491429 - 32491466
Alignment:
| Q |
177 |
ttcaccatgttactagattaattggcaactaatatcat |
214 |
Q |
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| T |
32491429 |
ttcaccatgttattagattaattgacaactaatatcat |
32491466 |
T |
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