View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3277_low_19 (Length: 326)
Name: NF3277_low_19
Description: NF3277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3277_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 9e-67; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 125 - 316
Target Start/End: Complemental strand, 23937846 - 23937652
Alignment:
| Q |
125 |
atgaagatgaaggttatggtggcaatagatgagagtgatggaagcttgtatgctcttaagtgggcccttgataatctcttcaacattatgactactaata |
224 |
Q |
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| T |
23937846 |
atgaagatgaaggtgatggtggcaatagatgagagtgatggaagcttgtatgctcttaagtgggcccttgataacctcttcaacattatggctactgata |
23937747 |
T |
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| Q |
225 |
ctatggaaggaacatcatctgaaa---acgagggaatggtgttccttgttcatgttgagccaaatttccacacttatgcttaccctatacctatg |
316 |
Q |
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| T |
23937746 |
ctatgaatggaacaacatctgaaaatgaggaggggatagtgtttcttgttcatgttgagccaaattttcacacttatgcataccctatacctatg |
23937652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 112 - 299
Target Start/End: Complemental strand, 23932136 - 23931955
Alignment:
| Q |
112 |
agaaaagagaaggatgaagatgaaggttatggtggcaatagatgagagtgatggaagcttgtatgctcttaagtgggcccttgataatctcttcaacatt |
211 |
Q |
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| T |
23932136 |
agaagagagaaggatgaagatgaaggttatggtggcaatagatgaaagtgatggaagcttttatgcccttaagtgggcccttgataatctcttcaacgtt |
23932037 |
T |
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| Q |
212 |
atgactactaatactatggaaggaacatcatctgaaaacgagggaatggtgttccttgttcatgttgagccaaatttccacacttatg |
299 |
Q |
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| T |
23932036 |
atgac------taccatggaaggaacatcatctgaaaatgagggaatggtgtttcttgttcatgttgaacccattttccacaattatg |
23931955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 23938859 - 23938786
Alignment:
| Q |
24 |
tgttaagcaatttggctgtgaagaattttgaagtgtctgaaggaagctcaagagaatttcacagttgcgtatta |
97 |
Q |
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| T |
23938859 |
tgttaagcaatttggttgtgaagaattttgatgtgtctgaaggaagctcaagagaatttcacaattgcgtatta |
23938786 |
T |
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