View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3277_low_2 (Length: 536)

Name: NF3277_low_2
Description: NF3277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3277_low_2
NF3277_low_2
[»] chr7 (14 HSPs)
chr7 (209-449)||(3196367-3196607)
chr7 (17-137)||(3198059-3198178)
chr7 (128-192)||(3196641-3196705)
chr7 (476-519)||(3196293-3196336)
chr7 (130-166)||(28703508-28703544)
chr7 (130-198)||(38858165-38858233)
chr7 (123-173)||(21411512-21411562)
chr7 (130-192)||(46987086-46987148)
chr7 (130-167)||(25246771-25246808)
chr7 (123-167)||(8615016-8615060)
chr7 (127-167)||(10029849-10029889)
chr7 (130-174)||(22267581-22267625)
chr7 (129-189)||(24991780-24991840)
chr7 (131-167)||(36731142-36731178)
[»] chr5 (11 HSPs)
chr5 (128-179)||(4763198-4763249)
chr5 (135-179)||(43135205-43135249)
chr5 (130-188)||(28604421-28604479)
chr5 (130-173)||(3955546-3955589)
chr5 (120-179)||(9123857-9123916)
chr5 (129-167)||(18489100-18489138)
chr5 (130-192)||(26409253-26409315)
chr5 (130-167)||(17338727-17338764)
chr5 (130-167)||(34206227-34206264)
chr5 (131-167)||(13409429-13409465)
chr5 (122-174)||(13547439-13547491)
[»] chr6 (10 HSPs)
chr6 (127-174)||(35110051-35110098)
chr6 (129-192)||(18254100-18254163)
chr6 (129-167)||(9923239-9923277)
chr6 (130-167)||(7083016-7083053)
chr6 (130-167)||(24373734-24373771)
chr6 (130-174)||(2105905-2105949)
chr6 (130-198)||(8381187-8381255)
chr6 (136-192)||(19554159-19554215)
chr6 (130-174)||(22576160-22576204)
chr6 (130-174)||(28592704-28592748)
[»] chr4 (13 HSPs)
chr4 (129-180)||(26008060-26008111)
chr4 (130-174)||(21266899-21266943)
chr4 (129-167)||(34247439-34247477)
chr4 (130-167)||(14577531-14577568)
chr4 (130-167)||(18915070-18915107)
chr4 (129-174)||(36071143-36071188)
chr4 (131-192)||(37921747-37921808)
chr4 (130-179)||(54500569-54500618)
chr4 (130-167)||(56497632-56497669)
chr4 (130-190)||(12671749-12671809)
chr4 (135-167)||(39093599-39093631)
chr4 (131-195)||(46676494-46676558)
chr4 (130-194)||(49473645-49473709)
[»] chr2 (21 HSPs)
chr2 (129-192)||(31397788-31397851)
chr2 (130-188)||(20517022-20517080)
chr2 (130-192)||(28771582-28771644)
chr2 (129-173)||(7792280-7792324)
chr2 (130-190)||(12124545-12124605)
chr2 (130-174)||(24548117-24548161)
chr2 (125-167)||(6141215-6141257)
chr2 (129-179)||(13000684-13000734)
chr2 (135-192)||(4137996-4138053)
chr2 (130-167)||(8387909-8387946)
chr2 (122-191)||(18324894-18324963)
chr2 (130-191)||(24593376-24593437)
chr2 (133-174)||(28202409-28202450)
chr2 (129-174)||(34471546-34471591)
chr2 (130-167)||(43117214-43117251)
chr2 (121-173)||(16385404-16385456)
chr2 (131-179)||(21295400-21295448)
chr2 (127-167)||(24520663-24520703)
chr2 (123-195)||(33832665-33832737)
chr2 (131-167)||(35685085-35685121)
chr2 (130-174)||(44488027-44488071)
[»] chr8 (7 HSPs)
chr8 (119-192)||(6235550-6235623)
chr8 (130-192)||(6099979-6100041)
chr8 (133-166)||(444127-444160)
chr8 (122-167)||(8910005-8910050)
chr8 (130-191)||(44293575-44293636)
chr8 (130-190)||(13575289-13575349)
chr8 (130-190)||(17704013-17704073)
[»] scaffold0328 (1 HSPs)
scaffold0328 (140-192)||(3348-3400)
[»] chr1 (8 HSPs)
chr1 (138-174)||(3136705-3136741)
chr1 (129-179)||(39492320-39492370)
chr1 (129-179)||(41926821-41926871)
chr1 (130-167)||(31890773-31890810)
chr1 (130-179)||(36371052-36371101)
chr1 (135-179)||(2817385-2817429)
chr1 (130-174)||(8153135-8153179)
chr1 (130-174)||(25165109-25165153)
[»] scaffold0025 (1 HSPs)
scaffold0025 (129-192)||(64217-64280)
[»] scaffold0334 (1 HSPs)
scaffold0334 (129-167)||(5181-5219)
[»] chr3 (13 HSPs)
chr3 (133-167)||(2662095-2662129)
chr3 (129-167)||(5428460-5428498)
chr3 (128-174)||(22843462-22843508)
chr3 (128-193)||(13042798-13042863)
chr3 (128-193)||(13050875-13050940)
chr3 (130-195)||(46226074-46226138)
chr3 (130-167)||(53429155-53429192)
chr3 (129-166)||(55198881-55198918)
chr3 (123-163)||(3604361-3604401)
chr3 (123-167)||(12131697-12131741)
chr3 (130-174)||(35392003-35392047)
chr3 (130-174)||(48376835-48376879)
chr3 (131-167)||(54230123-54230159)
[»] scaffold0005 (1 HSPs)
scaffold0005 (130-167)||(239807-239844)


Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 209 - 449
Target Start/End: Complemental strand, 3196607 - 3196367
Alignment:
Q  209 cctcgaattttaaaccgtgactgttaacaatgatgtctgactaggtgtttctcattagagtttaattttatcattttaatgaatattcttggtgagttat 308  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3196607 cctcgaattttaaaccgtggctgttaacagtgatgtctgactaggtgtttctcattagagtttaattttatcattttaatgaatattcttggtgagttat 3196508  T
Q  309 ggaaaaactagcttttgtttctattgcatatattaccctttgttttcgtttgaatgtaatttaagattgctcatgtatgaatggaccagtccttctatat 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3196507 ggaaaaactagcttttgtttctattgcatatattaccctttgttttcgtttgaatgtaatttaagattgctcatgtatgaatggaccagtccttctatat 3196408  T
Q  409 agtaggattataaggtactgagcaatatttatatttgcaag 449  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3196407 agtaggattataaggtactgagcaatatttatatttgcaag 3196367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 3198178 - 3198059
Alignment:
Q  17 taagtagagcaagggatcaaccttgttataaaaggnnnnnnncaatgttttctcaactataacgaaactttgtggtgccaccattatttttgattgaccc 116  Q
    |||||||||||||||||||||||||||||||||||       |||||||||||||| |||||||||||||||||||| | |||||||||| |||||||||    
T  3198178 taagtagagcaagggatcaaccttgttataaaaggtttttt-caatgttttctcaaatataacgaaactttgtggtgactccattattttcgattgaccc 3198080  T
Q  117 tcaaattgtctatgtgagttt 137  Q
    ||||||||||| |||||||||    
T  3198079 tcaaattgtctctgtgagttt 3198059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 3196705 - 3196641
Alignment:
Q  128 atgtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaacccc 192  Q
    |||||||||||||||| ||||||||||||||| ||||||| || |||||| ||||||||||||||    
T  3196705 atgtgagtttagctcagttggtaaagacaatgtataatatatgcaagttctgtgattcgaacccc 3196641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 476 - 519
Target Start/End: Complemental strand, 3196336 - 3196293
Alignment:
Q  476 aaatgggggtaaaatataatacaaacaaggatgtaccttgaata 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  3196336 aaatgggggtaaaatataatacaaacaaggatgtaccttgaata 3196293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 28703508 - 28703544
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataata 166  Q
    |||||||||||||| ||||||||||||||||||||||    
T  28703508 gtgagtttagctcagttggtaaagacaatgcataata 28703544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 38858233 - 38858165
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaaccccagatac 198  Q
    ||||| |||| |||||||||||||||| |||||||||| |||||| |||| | |||||| ||| |||||    
T  38858233 gtgagcttagttcaattggtaaagacagtgcataatatatgtaaggtccgaggttcgaatcccggatac 38858165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 21411512 - 21411562
Alignment:
Q  123 tgtctatgtgagtttagctcaattggtaaagacaatgcataatatgtgtaa 173  Q
    ||||| ||||||||||||| ||||||||  ||||||||||||||| |||||    
T  21411512 tgtctttgtgagtttagcttaattggtagggacaatgcataatatatgtaa 21411562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 46987086 - 46987148
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaacccc 192  Q
    ||||| |||||||| ||||||| ||||||||||||||| || ||| |||| | ||||||||||    
T  46987086 gtgagcttagctcagttggtaaggacaatgcataatatatgcaaggtccggggttcgaacccc 46987148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 25246771 - 25246808
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatat 167  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  25246771 gtgagtttagctcagttgataaagacaatgcataatat 25246808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 8615016 - 8615060
Alignment:
Q  123 tgtctatgtgagtttagctcaattggtaaagacaatgcataatat 167  Q
    ||||| |||||| |||||||| ||||||| |||||||||||||||    
T  8615016 tgtctttgtgagcttagctcagttggtaaggacaatgcataatat 8615060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 10029889 - 10029849
Alignment:
Q  127 tatgtgagtttagctcaattggtaaagacaatgcataatat 167  Q
    |||||||||||| || |||||||||||||||| ||||||||    
T  10029889 tatgtgagtttaacttaattggtaaagacaatacataatat 10029849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 22267581 - 22267625
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaag 174  Q
    ||||||||| |||| |||||| |||||||||||||||| ||||||    
T  22267581 gtgagtttaactcagttggtagagacaatgcataatatatgtaag 22267625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 24991780 - 24991840
Alignment:
Q  129 tgtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaac 189  Q
    |||||| |||||||| ||||||| ||||||||||||||| || ||| | || |||||||||    
T  24991780 tgtgagcttagctcagttggtaaggacaatgcataatatatgcaagatacgggattcgaac 24991840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 36731142 - 36731178
Alignment:
Q  131 tgagtttagctcaattggtaaagacaatgcataatat 167  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  36731142 tgagtttaactcgattggtaaagacaatgcataatat 36731178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 4763249 - 4763198
Alignment:
Q  128 atgtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccg 179  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||| ||||    
T  4763249 atgtgagtttaactcaattggtaaagacaatgcataatatatgtaaggtccg 4763198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 43135249 - 43135205
Alignment:
Q  135 tttagctcaattggtaaagacaatgcataatatgtgtaagttccg 179  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||    
T  43135249 tttagctcaattggtaaagacaatgcataatatatgtaaggtccg 43135205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 28604479 - 28604421
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaa 188  Q
    |||||||||||||| ||||||||||||||||||||||  |||||| |||| | ||||||    
T  28604479 gtgagtttagctcagttggtaaagacaatgcataataaatgtaaggtccggggttcgaa 28604421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 173
Target Start/End: Original strand, 3955546 - 3955589
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaa 173  Q
    ||||| |||| ||||||||||||||||||||||||||| |||||    
T  3955546 gtgagcttagttcaattggtaaagacaatgcataatatatgtaa 3955589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 9123916 - 9123857
Alignment:
Q  120 aattgtctatgtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccg 179  Q
    |||||||  |||||| ||| |||| ||||||||||||||||||||||| |||||| ||||    
T  9123916 aattgtccctgtgagcttaactcagttggtaaagacaatgcataatatatgtaagatccg 9123857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 167
Target Start/End: Complemental strand, 18489138 - 18489100
Alignment:
Q  129 tgtgagtttagctcaattggtaaagacaatgcataatat 167  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  18489138 tgtgagtttagctcagttggtatagacaatgcataatat 18489100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 26409253 - 26409315
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaacccc 192  Q
    ||||| |||||||| ||||||  ||||||||||||||| |||||| |||| | ||||||||||    
T  26409253 gtgagcttagctcagttggtatggacaatgcataatatatgtaaggtccggggttcgaacccc 26409315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 17338764 - 17338727
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatat 167  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  17338764 gtgagcttagctcaattggtaaagacaatacataatat 17338727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 34206227 - 34206264
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatat 167  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  34206227 gtgagtttaactcagttggtaaagacaatgcataatat 34206264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 13409429 - 13409465
Alignment:
Q  131 tgagtttagctcaattggtaaagacaatgcataatat 167  Q
    ||||||||||||| || ||||||||||||||||||||    
T  13409429 tgagtttagctcagttagtaaagacaatgcataatat 13409465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 13547439 - 13547491
Alignment:
Q  122 ttgtctatgtgagtttagctcaattggtaaagacaatgcataatatgtgtaag 174  Q
    ||||| |||| ||||||||||||||||||| || |||||||||| | ||||||    
T  13547439 ttgtccatgtaagtttagctcaattggtaaggataatgcataatgtatgtaag 13547491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 35110051 - 35110098
Alignment:
Q  127 tatgtgagtttagctcaattggtaaagacaatgcataatatgtgtaag 174  Q
    ||||||||||||||||||||||| |||| |||||||||||| ||||||    
T  35110051 tatgtgagtttagctcaattggtcaagataatgcataatatatgtaag 35110098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 18254163 - 18254100
Alignment:
Q  129 tgtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaacccc 192  Q
    |||||| |||||||| ||||||| ||||||||||||||  || ||| |||| ||||||||||||    
T  18254163 tgtgagcttagctcagttggtaaggacaatgcataatacatgcaaggtccgggattcgaacccc 18254100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 9923239 - 9923277
Alignment:
Q  129 tgtgagtttagctcaattggtaaagacaatgcataatat 167  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  9923239 tgtgagtttagctcaattgataaggacaatgcataatat 9923277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 7083053 - 7083016
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatat 167  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  7083053 gtgagcttagctcaattggtaaggacaatgcataatat 7083016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 24373771 - 24373734
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatat 167  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  24373771 gtgagtttaactcaattggtagagacaatgcataatat 24373734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 2105905 - 2105949
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaag 174  Q
    |||||||||||||  |||||||| |||||||||||||| ||||||    
T  2105905 gtgagtttagctcggttggtaaaaacaatgcataatatatgtaag 2105949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 8381255 - 8381187
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaaccccagatac 198  Q
    ||||| ||| |||| |||||||||||||||||||| || || ||| |||  | ||||||||||||||||    
T  8381255 gtgagcttaactcagttggtaaagacaatgcataacatatgcaaggtccagggttcgaaccccagatac 8381187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 19554159 - 19554215
Alignment:
Q  136 ttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaacccc 192  Q
    |||||| | ||||||||||||||||||||||| || ||| |  ||||||||||||||    
T  19554159 ttagcttagttggtaaagacaatgcataatatatgcaaggtttgtgattcgaacccc 19554215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 22576160 - 22576204
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaag 174  Q
    |||||||||||||| ||||||| ||||||| ||||||| ||||||    
T  22576160 gtgagtttagctcagttggtaaggacaatgaataatatatgtaag 22576204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 28592748 - 28592704
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaag 174  Q
    ||||| |||| |||||||| |||||||||||||||||| ||||||    
T  28592748 gtgagcttagttcaattggcaaagacaatgcataatatatgtaag 28592704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 129 - 180
Target Start/End: Complemental strand, 26008111 - 26008060
Alignment:
Q  129 tgtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgt 180  Q
    ||||||||||| ||||||||||||||||||||||||||| || ||| |||||    
T  26008111 tgtgagtttagttcaattggtaaagacaatgcataatatatgcaaggtccgt 26008060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 21266943 - 21266899
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaag 174  Q
    ||||| |||||||||||| ||||||||||||||||||| ||||||    
T  21266943 gtgagcttagctcaattgttaaagacaatgcataatatatgtaag 21266899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 34247439 - 34247477
Alignment:
Q  129 tgtgagtttagctcaattggtaaagacaatgcataatat 167  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  34247439 tgtgagtttagctcagttggtaaggacaatgcataatat 34247477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 14577568 - 14577531
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatat 167  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  14577568 gtgagtttagctcagttggtaaggacaatgcataatat 14577531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 18915107 - 18915070
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatat 167  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  18915107 gtgagtttagctcagttggtaaggacaatgcataatat 18915070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 36071143 - 36071188
Alignment:
Q  129 tgtgagtttagctcaattggtaaagacaatgcataatatgtgtaag 174  Q
    ||||||||||| ||| ||||||| ||||||||||||||| ||||||    
T  36071143 tgtgagtttaggtcagttggtaaggacaatgcataatatatgtaag 36071188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 37921747 - 37921808
Alignment:
Q  131 tgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaacccc 192  Q
    ||||||||||||| || |||| ||||||||||||||| || ||| |||| ||||| ||||||    
T  37921747 tgagtttagctcagttagtaaggacaatgcataatatatgcaaggtccgggattcaaacccc 37921808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 54500569 - 54500618
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccg 179  Q
    ||||| |||||||| |||||| |||||||||||||||| |||||| ||||    
T  54500569 gtgagcttagctcagttggtagagacaatgcataatatatgtaaggtccg 54500618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 56497669 - 56497632
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatat 167  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  56497669 gtgagcttagctcaattggtaaggacaatgcataatat 56497632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 12671809 - 12671749
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaacc 190  Q
    |||||||||||||| |||||| ||||||||||||| || || ||| |||| | ||||||||    
T  12671809 gtgagtttagctcagttggtatagacaatgcataaaatatgcaagatccggggttcgaacc 12671749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 39093631 - 39093599
Alignment:
Q  135 tttagctcaattggtaaagacaatgcataatat 167  Q
    ||||||||||||||||| |||||||||||||||    
T  39093631 tttagctcaattggtaaggacaatgcataatat 39093599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 46676558 - 46676494
Alignment:
Q  131 tgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaaccccaga 195  Q
    |||| |||||||| ||||||| ||||||||||||||| || ||| |||| | ||||| |||||||    
T  46676558 tgagcttagctcagttggtaaggacaatgcataatatatgcaaggtccggggttcgacccccaga 46676494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 49473645 - 49473709
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaaccccag 194  Q
    ||||| ||||| || ||||||| ||||||||||||||| || ||| |||| | ||||||||||||    
T  49473645 gtgagcttagcccagttggtaaggacaatgcataatatatgcaaggtccggggttcgaaccccag 49473709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 31397851 - 31397788
Alignment:
Q  129 tgtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaacccc 192  Q
    |||||| |||||||||||||||  |||||||||||| || |||||| |||| ||||||||||||    
T  31397851 tgtgagcttagctcaattggtagggacaatgcataaaatatgtaaggtccgagattcgaacccc 31397788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 20517022 - 20517080
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaa 188  Q
    |||||||||||||| |||||||  |||||||||||||| ||||||||| | ||||||||    
T  20517022 gtgagtttagctcagttggtaagaacaatgcataatatatgtaagttctgggattcgaa 20517080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 28771582 - 28771644
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaacccc 192  Q
    |||||||||||||| ||||||| ||||||||||||||| || ||| |||| | ||||||||||    
T  28771582 gtgagtttagctcagttggtaaggacaatgcataatatatgcaagatccgcggttcgaacccc 28771644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 7792280 - 7792324
Alignment:
Q  129 tgtgagtttagctcaattggtaaagacaatgcataatatgtgtaa 173  Q
    ||||| ||||||||||||| ||||||||||||||||||| |||||    
T  7792280 tgtgaatttagctcaattgataaagacaatgcataatatatgtaa 7792324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 12124545 - 12124605
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaacc 190  Q
    |||||||||||||| ||||||| ||||||||||||||| || ||| |||| | ||||||||    
T  12124545 gtgagtttagctcagttggtaaggacaatgcataatatatgcaaggtccggggttcgaacc 12124605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 24548117 - 24548161
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaag 174  Q
    ||||||||| ||||||||||| |||||||||||||||| ||||||    
T  24548117 gtgagtttaactcaattggtatagacaatgcataatatatgtaag 24548161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 167
Target Start/End: Original strand, 6141215 - 6141257
Alignment:
Q  125 tctatgtgagtttagctcaattggtaaagacaatgcataatat 167  Q
    |||||||||||||| |||| ||||||| |||||||||||||||    
T  6141215 tctatgtgagtttatctcagttggtaaggacaatgcataatat 6141257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 13000684 - 13000734
Alignment:
Q  129 tgtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccg 179  Q
    |||||| |||||||| |||||||||| |||||||||||| |||||| ||||    
T  13000684 tgtgagcttagctcagttggtaaagataatgcataatatatgtaaggtccg 13000734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 4137996 - 4138053
Alignment:
Q  135 tttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaacccc 192  Q
    ||||||||||||||||| ||||||| ||||||| || ||| |||| ||||| ||||||    
T  4137996 tttagctcaattggtaaggacaatgtataatatatgcaaggtccgagattcaaacccc 4138053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 8387946 - 8387909
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatat 167  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  8387946 gtgagtttaactcaattggtaaggacaatgcataatat 8387909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 18324963 - 18324894
Alignment:
Q  122 ttgtctatgtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaaccc 191  Q
    ||||||||||||| ||| |||| ||||||| ||||||||||||||| || ||| ||   |||||||||||    
T  18324963 ttgtctatgtgagcttaactcagttggtaaggacaatgcataatatatgcaagatctaggattcgaaccc 18324894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 24593376 - 24593437
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaaccc 191  Q
    ||||| |||||||| ||||||| ||||||||||||||| || ||| |||| | |||||||||    
T  24593376 gtgagcttagctcagttggtaaggacaatgcataatatatgcaaggtccggggttcgaaccc 24593437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 28202409 - 28202450
Alignment:
Q  133 agtttagctcaattggtaaagacaatgcataatatgtgtaag 174  Q
    ||||||||||||||||||  ||||||||||||||| ||||||    
T  28202409 agtttagctcaattggtatggacaatgcataatatatgtaag 28202450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 34471591 - 34471546
Alignment:
Q  129 tgtgagtttagctcaattggtaaagacaatgcataatatgtgtaag 174  Q
    |||||||||| |||||||||||| ||||||||| ||||| ||||||    
T  34471591 tgtgagtttaactcaattggtaatgacaatgcaaaatatatgtaag 34471546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 43117251 - 43117214
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatat 167  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  43117251 gtgagtttagctcagttggtaaggacaatgcataatat 43117214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 16385404 - 16385456
Alignment:
Q  121 attgtctatgtgagtttagctcaattggtaaagacaatgcataatatgtgtaa 173  Q
    ||||||||| ||| ||||| | | ||||||||||||||||||||||| |||||    
T  16385404 attgtctatatgaatttagttaagttggtaaagacaatgcataatatatgtaa 16385456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 21295400 - 21295448
Alignment:
Q  131 tgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccg 179  Q
    ||||||||||||| ||||||| |||||||||||| || |||||| ||||    
T  21295400 tgagtttagctcagttggtaatgacaatgcataaaatatgtaagatccg 21295448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 24520703 - 24520663
Alignment:
Q  127 tatgtgagtttagctcaattggtaaagacaatgcataatat 167  Q
    |||||||| |||||| | |||||||||||||||||||||||    
T  24520703 tatgtgagcttagcttagttggtaaagacaatgcataatat 24520663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 195
Target Start/End: Complemental strand, 33832737 - 33832665
Alignment:
Q  123 tgtctatgtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaaccccaga 195  Q
    ||||| |||||| |||||||  ||||||| ||||||||||||||| |||||  || | ||||||||| |||||    
T  33832737 tgtctttgtgagcttagctcggttggtaacgacaatgcataatatatgtaatgtctgagattcgaactccaga 33832665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 35685121 - 35685085
Alignment:
Q  131 tgagtttagctcaattggtaaagacaatgcataatat 167  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  35685121 tgagtttagctcagttggtaaggacaatgcataatat 35685085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 44488071 - 44488027
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaag 174  Q
    |||||||||| ||| ||||||| ||||||||||||||| ||||||    
T  44488071 gtgagtttagttcagttggtaaggacaatgcataatatatgtaag 44488027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 6235623 - 6235550
Alignment:
Q  119 aaattgtctatgtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaacccc 192  Q
    ||||||||  ||||||||||||||| ||||||  ||| ||||||||||| |||||| |||| ||||| ||||||    
T  6235623 aaattgtccttgtgagtttagctcagttggtatggacgatgcataatatatgtaaggtccgggattcaaacccc 6235550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 6100041 - 6099979
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaacccc 192  Q
    |||| ||||||||||||  ||||||||||||||||||| ||| || || | ||||||||||||    
T  6100041 gtgaatttagctcaatttataaagacaatgcataatatatgtgaggtctgagattcgaacccc 6099979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 166
Target Start/End: Original strand, 444127 - 444160
Alignment:
Q  133 agtttagctcaattggtaaagacaatgcataata 166  Q
    ||||||||||| ||||||||||||||||||||||    
T  444127 agtttagctcagttggtaaagacaatgcataata 444160  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 8910050 - 8910005
Alignment:
Q  122 ttgtctatgtgagtttagctcaattggtaaagacaatgcataatat 167  Q
    ||||| ||||||| |||||||| ||||||| |||||||||||||||    
T  8910050 ttgtccatgtgagcttagctcagttggtaaggacaatgcataatat 8910005  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 44293575 - 44293636
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaaccc 191  Q
    ||||| |||||||| |||||| |||||||||||||||| |||||| || | | |||||||||    
T  44293575 gtgagcttagctcagttggtatagacaatgcataatatatgtaagatctggggttcgaaccc 44293636  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 13575289 - 13575349
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaacc 190  Q
    |||||||||||||| ||||||  |||||||||||| || || |||||||| | ||||||||    
T  13575289 gtgagtttagctcagttggtagggacaatgcataacatatgcaagttccgaggttcgaacc 13575349  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 17704013 - 17704073
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaacc 190  Q
    ||||| |||||||| ||||||| ||||||||||||||| || ||| || ||||||| ||||    
T  17704013 gtgagcttagctcagttggtaaggacaatgcataatatatgcaaggtctgtgattcaaacc 17704073  T

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Target: scaffold0328 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 3400 - 3348
Alignment:
Q  140 ctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaacccc 192  Q
    |||||||||||| ||||||||||||||  |||||| |||| ||||||||||||    
T  3400 ctcaattggtaaggacaatgcataatagatgtaaggtccgagattcgaacccc 3348  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 3136741 - 3136705
Alignment:
Q  138 agctcaattggtaaagacaatgcataatatgtgtaag 174  Q
    |||||||||||||||||||||||||||||| ||||||    
T  3136741 agctcaattggtaaagacaatgcataatatatgtaag 3136705  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 39492320 - 39492370
Alignment:
Q  129 tgtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccg 179  Q
    |||||||||| |||||||  ||||||||||||||||||| |||||| ||||    
T  39492320 tgtgagtttaactcaattaataaagacaatgcataatatatgtaaggtccg 39492370  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 41926821 - 41926871
Alignment:
Q  129 tgtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccg 179  Q
    |||||| |||||||| ||||||| ||||||||||||||| |||||| ||||    
T  41926821 tgtgagcttagctcagttggtaaggacaatgcataatatatgtaaggtccg 41926871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 31890810 - 31890773
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatat 167  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  31890810 gtgagtttagctcagttggtaaggacaatgcataatat 31890773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 36371101 - 36371052
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccg 179  Q
    ||||| |||||||| |||||| |||||||||||||||| |||||| ||||    
T  36371101 gtgagcttagctcagttggtagagacaatgcataatatatgtaaggtccg 36371052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 2817429 - 2817385
Alignment:
Q  135 tttagctcaattggtaaagacaatgcataatatgtgtaagttccg 179  Q
    ||||||||| ||||||| ||||||||||||||| |||||| ||||    
T  2817429 tttagctcagttggtaaggacaatgcataatatatgtaaggtccg 2817385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 8153135 - 8153179
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaag 174  Q
    ||||||||| |||| |||||| |||||||||||||||| ||||||    
T  8153135 gtgagtttaactcagttggtatagacaatgcataatatatgtaag 8153179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 25165153 - 25165109
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaag 174  Q
    ||||||||| |||||||||||  ||||||||||||||| ||||||    
T  25165153 gtgagtttaactcaattggtatggacaatgcataatatatgtaag 25165109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 64217 - 64280
Alignment:
Q  129 tgtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaacccc 192  Q
    |||||| ||||||||| |||||  ||||||||||||||| || ||| |||| ||||||||||||    
T  64217 tgtgagcttagctcaactggtatggacaatgcataatatatgcaaggtccgggattcgaacccc 64280  T

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Target: scaffold0334 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 5181 - 5219
Alignment:
Q  129 tgtgagtttagctcaattggtaaagacaatgcataatat 167  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  5181 tgtgagtttagctcaattggtatggacaatgcataatat 5219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 167
Target Start/End: Original strand, 2662095 - 2662129
Alignment:
Q  133 agtttagctcaattggtaaagacaatgcataatat 167  Q
    ||||||||||| |||||||||||||||||||||||    
T  2662095 agtttagctcagttggtaaagacaatgcataatat 2662129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 167
Target Start/End: Complemental strand, 5428498 - 5428460
Alignment:
Q  129 tgtgagtttagctcaattggtaaagacaatgcataatat 167  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  5428498 tgtgagtttagctcaattgataaaaacaatgcataatat 5428460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 22843462 - 22843508
Alignment:
Q  128 atgtgagtttagctcaattggtaaagacaatgcataatatgtgtaag 174  Q
    ||||||| |||||||| || |||||||||||||||||||| ||||||    
T  22843462 atgtgagcttagctcagttagtaaagacaatgcataatatatgtaag 22843508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 13042863 - 13042798
Alignment:
Q  128 atgtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaacccca 193  Q
    ||||||| |||||||| ||||||||||||||  ||||||| || ||| |||| | |||||||||||    
T  13042863 atgtgagcttagctcagttggtaaagacaatttataatatatgcaaggtccggggttcgaacccca 13042798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 13050940 - 13050875
Alignment:
Q  128 atgtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaacccca 193  Q
    ||||||| |||||||| ||||||||||||||  ||||||| || ||| |||| | |||||||||||    
T  13050940 atgtgagcttagctcagttggtaaagacaatttataatatatgcaaggtccggggttcgaacccca 13050875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 46226138 - 46226074
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaagttccgtgattcgaaccccaga 195  Q
    ||||||||| |||||||||||  ||||||||||||||| || ||| |||| | |||||||||||||    
T  46226138 gtgagtttaactcaattggtagggacaatgcataatatatgcaaggtccg-ggttcgaaccccaga 46226074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 53429155 - 53429192
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatat 167  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  53429155 gtgagtttagctcagttggtatagacaatgcataatat 53429192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 55198881 - 55198918
Alignment:
Q  129 tgtgagtttagctcaattggtaaagacaatgcataata 166  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  55198881 tgtgagtttagctcagttggtaaggacaatgcataata 55198918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 3604401 - 3604361
Alignment:
Q  123 tgtctatgtgagtttagctcaattggtaaagacaatgcata 163  Q
    ||||| |||||||||| |||| |||||||||||||||||||    
T  3604401 tgtctctgtgagtttaactcagttggtaaagacaatgcata 3604361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 12131741 - 12131697
Alignment:
Q  123 tgtctatgtgagtttagctcaattggtaaagacaatgcataatat 167  Q
    ||||| |||||| |||| |||||||||| ||||||||||||||||    
T  12131741 tgtctttgtgagcttagttcaattggtatagacaatgcataatat 12131697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 35392003 - 35392047
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaag 174  Q
    |||||||||||||| ||||||| |||||| |||||||| ||||||    
T  35392003 gtgagtttagctcagttggtaatgacaatacataatatatgtaag 35392047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 48376835 - 48376879
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatatgtgtaag 174  Q
    ||||| |||||||| |||||||||| |||||||||||| ||||||    
T  48376835 gtgagcttagctcagttggtaaagataatgcataatatatgtaag 48376879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 54230159 - 54230123
Alignment:
Q  131 tgagtttagctcaattggtaaagacaatgcataatat 167  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  54230159 tgagtttagctcagttggtaaggacaatgcataatat 54230123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 239807 - 239844
Alignment:
Q  130 gtgagtttagctcaattggtaaagacaatgcataatat 167  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  239807 gtgagtttagctcagttggtaaggacaatgcataatat 239844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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