View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3277_low_21 (Length: 310)
Name: NF3277_low_21
Description: NF3277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3277_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 12 - 292
Target Start/End: Original strand, 49583481 - 49583761
Alignment:
| Q |
12 |
atgatccggaaacatctgttgaggtgggtgaaatttaccaggctgaacttccaattttaatttcaaagtctgagtatattttgttgcaaaataacaccga |
111 |
Q |
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| T |
49583481 |
atgatccggaaacatctgttgaggtgggtgaaatttaccaggctgaacttccaattttaatttcaaagtctgagtatattttgttgcaaaataacaccga |
49583580 |
T |
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| Q |
112 |
ggcagaaagtatacaccacaactttcaaatagcattacctatcccaataacttggataaagagttatgatattcgggaagaaacaaagattgggatgcat |
211 |
Q |
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| T |
49583581 |
ggcagaaagtatacaccacaactttcaaataggattacctatcccaataacttggataaagagttatgatattcgggaagaaacaaagattgggatgcat |
49583680 |
T |
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| Q |
212 |
gaggagcatgaacataaagggcagattcttgttcctggctctcgaagtgacaactggactgaaatcgaagaggccggttta |
292 |
Q |
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| T |
49583681 |
gaggagcatgaacataaagggcagattcttgttcctggctctcgaagtgacaactggactgaaattgaagaggccggttta |
49583761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 286
Target Start/End: Original strand, 49588989 - 49589052
Alignment:
| Q |
223 |
acataaagggcagattcttgttcctggctctcgaagtgacaactggactgaaatcgaagaggcc |
286 |
Q |
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| T |
49588989 |
acataaagggaagattcttgttcatggttcttgaactgatacctggactgaaatcgaagaggcc |
49589052 |
T |
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