View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3277_low_23 (Length: 288)
Name: NF3277_low_23
Description: NF3277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3277_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 5 - 190
Target Start/End: Complemental strand, 10231399 - 10231214
Alignment:
| Q |
5 |
actcttacgatcttcttctccaagatccactttactttatcaacatggttcccaaacccataataatattaacaactaaacaaccacccacaattcctat |
104 |
Q |
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| T |
10231399 |
actcttacgatcttcttctccaagatccactttactttatcaacatggttcccaaacccataataatattaacaactaaacaaccacccacaattcctat |
10231300 |
T |
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| Q |
105 |
ccctcaatttaacatagcattcgtcagaacccaagaaaaaccccaaacatcacaacctcatgagacactaagaaccggttcccctg |
190 |
Q |
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| T |
10231299 |
ccctcaatttaacatagcattcgtcagaacccaagaaaaaccccaaacatcacaacctcatgagacactaagaaccggttcccctg |
10231214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 10240166 - 10240025
Alignment:
| Q |
21 |
tctccaagatccactttactttatcaacatggttcccaaacccataataatattaacaactaaacaaccacccacaattcctatccctcaatttaacata |
120 |
Q |
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| T |
10240166 |
tctccaaaatccactttaccttatcaacatggttcccaaacccatcatcataatagcatgtaaacaaccacccacaacttatatccctcaatttaacaca |
10240067 |
T |
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| Q |
121 |
gcattcgtcagaacccaagaaaaaccccaaacatcacaacct |
162 |
Q |
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| T |
10240066 |
gcatccgtcagaaccaaagaaaaacctcaaacatcacaacct |
10240025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 159
Target Start/End: Original strand, 10254486 - 10254574
Alignment:
| Q |
74 |
taacaactaaacaaccacccacaa-ttc--ctatccctcaatttaacatagcattcgtcagaacccaagaaaaaccccaaacatcacaa |
159 |
Q |
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| T |
10254486 |
taacaagtaaacaaccaccaacaacttcttctatccctccattcaacatctcatccatcaaaaccaaagaaaaaccccaaacatcacaa |
10254574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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