View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3277_low_28 (Length: 252)
Name: NF3277_low_28
Description: NF3277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3277_low_28 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 6220562 - 6220801
Alignment:
| Q |
13 |
aagggcatgacaaagatttctagaggctaaattgtctctaatacaatgaaggaaagactcatcatgagcattacaccaagtgtaaagacaattaagatcc |
112 |
Q |
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| T |
6220562 |
aagggcatggcaaagatttctagaggctaaatagtctctaatacaatgaaggaaagactcatcatgagcattacaccaagtgtaaagacaattaagatcc |
6220661 |
T |
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| Q |
113 |
aagtacatccnnnnnnnntctaattaagtacgtaatataannnnnnnaacaaagcaagatggaatattcaacattaatttcgagaggggtatgtccatgt |
212 |
Q |
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| T |
6220662 |
aagtacacccaaaacaaatctaattaagtacgcaatat-ttttttttaacaaatcaagatggaatattcaacattaatttcgagaggggtatgtccatgt |
6220760 |
T |
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| Q |
213 |
ctacgaa-attttcacaatgcgataataattcaaatcccac |
252 |
Q |
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| T |
6220761 |
ctacgaatattttcacaatgcgataataattcaaatcccac |
6220801 |
T |
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