View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3277_low_29 (Length: 252)
Name: NF3277_low_29
Description: NF3277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3277_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 42238615 - 42238833
Alignment:
| Q |
19 |
tttaatactagtgatcacgattataacaaaaatcagttgccagacctcaacttggctgctaatgttgaagacacttcactatcaagagatgattctaact |
118 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42238615 |
tttaatactagtgatcacgattataacataaatcagttgccataccacaacttggctgctaatgttgaagacacttcactatcaagagatgattctaact |
42238714 |
T |
|
| Q |
119 |
ttgaatgacaccatgaaactcaaagtcatgaaatagaggttgataccacaaacaattcaggaacattatacccaatatgtggcagaaagtgaagaggaaa |
218 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42238715 |
ttgaattacaccatgaaactcaaagtcatgaaacagaggttgataccacaaacaattcaggaacattatacccaatatgtggaagaaagtgaagaggaaa |
42238814 |
T |
|
| Q |
219 |
tagagattgttatgtttga |
237 |
Q |
| |
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||||||||||||||||||| |
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| T |
42238815 |
tagagattgttatgtttga |
42238833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 41 - 175
Target Start/End: Complemental strand, 7016460 - 7016321
Alignment:
| Q |
41 |
ataacaaaaatcagttgccagacctcaacttggctgctaatgttgaagacacttcactatcaagagatgattctaactttgaatgacaccatgaaactca |
140 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| |||||||||||||||| ||||||||||||||| |
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| T |
7016460 |
ataacacaaatcagttgccagacctcaacttggctgttaatgttgaagacactttgctatcaatagacgattctaactttgaattacaccatgaaactca |
7016361 |
T |
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| Q |
141 |
aagtcatgaaa-----tagaggttgataccacaaacaatt |
175 |
Q |
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|||||||| || |||| ||||||||||||||||||| |
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| T |
7016360 |
aagtcatggaatagattagatgttgataccacaaacaatt |
7016321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 32059002 - 32059118
Alignment:
| Q |
48 |
aaatcagttgccagacctcaacttggctgctaatgttgaagacacttcactatcaagagatgattctaactttgaatgacaccatgaaactcaaagtcat |
147 |
Q |
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||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||| |||||||||||||| ||| ||| ||||||||||||| |||| |
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| T |
32059002 |
aaatcagttgccagacctcaatttggctgctaatgttaaagacacttaactatcaagaaatgattctaactttaaattacatcatgaaactcaaaatcat |
32059101 |
T |
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| Q |
148 |
gaaatagaggttgatac |
164 |
Q |
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||||||||||||||||| |
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| T |
32059102 |
gaaatagaggttgatac |
32059118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 180939 - 180834
Alignment:
| Q |
19 |
tttaatactagtgatcacgattataacaaaaatcagttgccagacctcaacttggctgctaatgttgaagacacttcactatcaagagatgattctaact |
118 |
Q |
| |
|
|||||| || |||||||| || |||||| |||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||| | |
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| T |
180939 |
tttaatccttgtgatcacaatgataacataaatcagttgtcagacctcaacttgcctactaatgttgaagacacttcactatcaagagatgattctaatt |
180840 |
T |
|
| Q |
119 |
ttgaat |
124 |
Q |
| |
|
|||||| |
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|
| T |
180839 |
ttgaat |
180834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 4745571 - 4745617
Alignment:
| Q |
194 |
tatgtggcagaaagtgaagaggaaatagagattgttatgtttgatga |
240 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4745571 |
tatgtggaagaaagtgaagaggaaatagagattgttatgtttgatga |
4745617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 50225087 - 50225202
Alignment:
| Q |
19 |
tttaatactagtgatcacgattataacaaaaatcagttgccagacctcaacttggctgctaatgttgaagacacttcactatcaagagatgattctaact |
118 |
Q |
| |
|
|||||| || ||| ||||||| |||||| |||||||||| |||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
50225087 |
tttaatccttgtgttcacgatgataacataaatcagttgtcagacctcaacttgtctgttaatgttgaagacacttcactatcaaaagatgattctaact |
50225186 |
T |
|
| Q |
119 |
ttgaatgacaccatga |
134 |
Q |
| |
|
|||||| ||||||||| |
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|
| T |
50225187 |
ttgaattacaccatga |
50225202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 17649385 - 17649431
Alignment:
| Q |
194 |
tatgtggcagaaagtgaagaggaaatagagattgttatgtttgatga |
240 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
17649385 |
tatgtggaagaaagtgaagaggaaatagagattgttatgtttgatga |
17649431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 42541369 - 42541323
Alignment:
| Q |
194 |
tatgtggcagaaagtgaagaggaaatagagattgttatgtttgatga |
240 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
42541369 |
tatgtggaagaaagtgaagaggaaatatagattgttatgtttgatga |
42541323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 1328186 - 1328232
Alignment:
| Q |
194 |
tatgtggcagaaagtgaagaggaaatagagattgttatgtttgatga |
240 |
Q |
| |
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||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
1328186 |
tatgtggaagaaagtgaataggaaatagagattgttatgtttgatga |
1328232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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