View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3277_low_33 (Length: 249)
Name: NF3277_low_33
Description: NF3277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3277_low_33 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 46685622 - 46685861
Alignment:
| Q |
1 |
aatcaaaaactactttccttttcctttgtgggatactctgacataaatcttcattttcctcttccttttcatgatttgaaccagaagaacatggatcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
46685622 |
aatcaaaaactactttccttttcctttgtgggatactctgacataaatctgcattttcctcttccttttcatgatttgaaccagaagaagatggatcaat |
46685721 |
T |
|
| Q |
101 |
cggacatttccccaacgctatcgttgtccttctcatgttttgatttaactgttgattcgttatgttcttgaactccactttcattgtccttttcggggta |
200 |
Q |
| |
|
||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
46685722 |
cggacgtttccccagcgctatcattgtccttctcatgttttgatttaactgttgattcgttatgttcttgaactccactttcattgtcctttttggggta |
46685821 |
T |
|
| Q |
201 |
ctccgaccgaaatattttgtagcctgaacttcattctctg |
240 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
46685822 |
ctccgaccgaaatcttttgtagcctgaacttcattctctg |
46685861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 46703657 - 46703734
Alignment:
| Q |
12 |
actttccttttcctttgtgggatactctgacataaatcttcattttcctcttccttttcatgatttgaaccagaagaa |
89 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| ||||| | |||||||||||||| |||| | ||||||||||||| |
|
|
| T |
46703657 |
actttcctcttccttttgcggatactctgacaaaaatcagctctttcctcttcctttacatgttctgaaccagaagaa |
46703734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University