View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3277_low_34 (Length: 244)
Name: NF3277_low_34
Description: NF3277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3277_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 6221066 - 6221296
Alignment:
| Q |
1 |
aattgtaaaaatttatattttgttcgaagttcaatcttcaattctgccatgagatatttctctacactttgaatattcctatttcctaagtgacacaaaa |
100 |
Q |
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| T |
6221066 |
aattgtaaaaatttatattttgttcgaagttcaatcttcaattctgccatgagatatttctctaaactttgaatattcctatttcctaagtgacacaaaa |
6221165 |
T |
|
| Q |
101 |
gcaattagcgcatccatttctgcagttcatactagtaatgtcaagggcatagtacctcttgaagatctttatcggtttatccttctggttaagatcttaa |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6221166 |
gcaa---gcgcatccatttctgcagttcatactagtaatgtcaagggcatagtacctcttgaagatctttatcggtttatccttctggttaagatcttaa |
6221262 |
T |
|
| Q |
201 |
agttttgggaaca--attcatgtattgtttctga |
232 |
Q |
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||||||||||||| ||||||||||||||||||| |
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| T |
6221263 |
agttttgggaacaatattcatgtattgtttctga |
6221296 |
T |
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