View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3277_low_35 (Length: 244)
Name: NF3277_low_35
Description: NF3277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3277_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 78 - 229
Target Start/End: Original strand, 11993029 - 11993178
Alignment:
| Q |
78 |
gagggagctacctcattctgagaaattggcagttaacctaccttaggaccaagtggttccagttagtctagcacagtataaacatttgaggatgaggttc |
177 |
Q |
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| T |
11993029 |
gagggagctacctcattctaagaaattggcagttaacctaccttaggaccaagtggttccagt--gtccaacacggtatacacatttgaggatgaggttc |
11993126 |
T |
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| Q |
178 |
caaattgggtaattggtcattttgtttcttaaatgtgtgaggcagtgttatt |
229 |
Q |
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| T |
11993127 |
caaatagggtaattggtcattttgtttcttaaatgtgtgaggccgtgttatt |
11993178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 11992047 - 11992108
Alignment:
| Q |
1 |
aatcatagattcataatcaatataagcgacctacataagactttctggcatagtgataatta |
62 |
Q |
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| T |
11992047 |
aatcatagattaataatcaatataagagacctacacaagactttatggcataatgataatta |
11992108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 12025522 - 12025578
Alignment:
| Q |
9 |
attcataatcaatataagcgacctacataagactttctggcatagtgataattaaat |
65 |
Q |
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| T |
12025522 |
attcataatcaatataagagacctacatcagactttctggcataataacaattaaat |
12025578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 43495548 - 43495505
Alignment:
| Q |
78 |
gagggagctacctcattctgagaaattggcagttaacctacctt |
121 |
Q |
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| T |
43495548 |
gagggagctacctcattctgaaaaattggcagttactctacctt |
43495505 |
T |
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