View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3277_low_4 (Length: 504)
Name: NF3277_low_4
Description: NF3277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3277_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 15 - 485
Target Start/End: Complemental strand, 47836949 - 47836476
Alignment:
| Q |
15 |
gatttagatttgagttcatgaggatgattgagaaatagttgtgatgttgcggttaggtctcttccttttcttatggtagctaactcctctagcctttgac |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47836949 |
gatttagatttgagttcatgaggatgattgagaaatagttgtgatgttgcggttaggtctcttccttttcttatggtagctaactcctctagcctttgac |
47836850 |
T |
|
| Q |
115 |
tgaaaatcacgaacatcacgcaagtaaaacctaacagcaccatcaccaaaagggttact---tccaccattgatctcttgatcatatgcggcgcggaggc |
211 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
47836849 |
tggaaatcacgaacatcacgcaagtaaaacctaacagcaccatcaccaaaaggattactacttccaccattgatctcttgatcatatgcggcgcggaggc |
47836750 |
T |
|
| Q |
212 |
gaccgacaagagcatcaaggctaccccacgcctgacggagaggacaagcacatggagatggagggtttggcatcccaaagaaaggacaagttggattgtg |
311 |
Q |
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| T |
47836749 |
gaccgacaagagcatcaaggctaccccacgcctgacggagaggacaagcacatggagatggagggtttggcatcccaaagaaaggacaagttggattgtg |
47836650 |
T |
|
| Q |
312 |
aaccttagtcttcccaaattgatcaagatagtgaaggaattcaagaacatgtgttccattgcacattgaagcagaaagtggcactggtcgatggtttctt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47836649 |
aaccttagtcttcccaaattgatcaagatagtgaaggaattcaagaacatgtgttccattgcacattgaagcagaaagtggcactggtcgatggtttctt |
47836550 |
T |
|
| Q |
412 |
aaatactggcagaatgtgttccagtctctcctcttttggctctcgtacctgttgatcttgttgccaccacttga |
485 |
Q |
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| T |
47836549 |
aaatactggcagaatgtgttccagtctctcctcttttggctctcgtacctgttgatcttgttgccaccacttga |
47836476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 208 - 343
Target Start/End: Complemental strand, 35608766 - 35608631
Alignment:
| Q |
208 |
aggcgaccgacaagagcatcaaggctaccccacgcctgacggagaggacaagcacatggagatggagggtttggcatcccaaagaaaggacaagttggat |
307 |
Q |
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|||||||||| ||||| || || ||||||||||| ||||| |||||||| | ||| |||| ||| || || || || |||||||||||||||| | | |
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| T |
35608766 |
aggcgaccgatgagagcgtcgagactaccccacgcttgacgaagaggacatggacaaggagctggtggattagggatgccaaagaaaggacaaggatggt |
35608667 |
T |
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| Q |
308 |
tgtgaaccttagtcttcccaaattgatcaagatagt |
343 |
Q |
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| T |
35608666 |
tgtgaactttggttttcccaaactggtcaagatagt |
35608631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 450
Target Start/End: Complemental strand, 35608574 - 35608527
Alignment:
| Q |
403 |
tggtttcttaaatactggcagaatgtgttccagtctctcctcttttgg |
450 |
Q |
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|||||||| | |||||| |||||||||||||||||||| ||||||||| |
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| T |
35608574 |
tggtttctgagatactgacagaatgtgttccagtctcttctcttttgg |
35608527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 35608910 - 35608806
Alignment:
| Q |
67 |
ttaggtctcttccttttcttatggtagctaactcctctagcctttgactgaaaatcacgaacatcacgcaagtaaaacctaacagcaccatcaccaaaag |
166 |
Q |
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||||| |||||||||||||| | |||||||| ||||||| |||| |||||||||||||| || | || |||| |||||||| || | |||||||| |
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| T |
35608910 |
ttaggcctcttccttttcttttcatagctaacccctctagattttgcttgaaaatcacgaacgtcccttaaataaatcctaacagaacgagaaccaaaag |
35608811 |
T |
|
| Q |
167 |
ggtta |
171 |
Q |
| |
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||||| |
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| T |
35608810 |
ggtta |
35608806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 362
Target Start/End: Complemental strand, 35814626 - 35814573
Alignment:
| Q |
309 |
gtgaaccttagtcttcccaaattgatcaagatagtgaaggaattcaagaacatg |
362 |
Q |
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||||||||||||||| |||||||||||||| || |||| || ||||||||||| |
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| T |
35814626 |
gtgaaccttagtcttaccaaattgatcaaggtaacgaagaaaatcaagaacatg |
35814573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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