View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3277_low_44 (Length: 226)
Name: NF3277_low_44
Description: NF3277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3277_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 46770493 - 46770275
Alignment:
| Q |
1 |
cacatatatataaaataaatatgaaaacaaattactaattttatggtacattgttgatattgaaaacaaattactaattttatagatcacctttttaaga |
100 |
Q |
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| T |
46770493 |
cacatatatataaaataaatatgaaaacaaattactaattttatggtacattgttgatattgaaaacaaattactaattttatagatcacctttttaaga |
46770394 |
T |
|
| Q |
101 |
ttaagtaggaatcgtcgtgtaagataagcctaagaaattgaacgagcactgacatttagctagtcatattgaagccgcgtgctgtggctactcctagtga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
46770393 |
ttaagtaggaatcgtcgtgtaagataagcctaagaaattgaacgagcactgacatttagctagtcatattgaagctacgtgttgtggctactcctagtga |
46770294 |
T |
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| Q |
201 |
taaatggactaatcctatg |
219 |
Q |
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||| ||||||||||||||| |
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| T |
46770293 |
taagtggactaatcctatg |
46770275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 48 - 152
Target Start/End: Complemental strand, 46762582 - 46762478
Alignment:
| Q |
48 |
acattgttgatattgaaaacaaattactaattttatagatcacctttttaagattaagtaggaatcgtcgtgtaagataagcctaagaaattgaacgagc |
147 |
Q |
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||||||||||||||||||||| ||| | ||||||| ||||||| ||||||||| ||||||||| ||||||||| ||| || | ||||||||||||||| |
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| T |
46762582 |
acattgttgatattgaaaacagattgcgcattttatgcatcacctgtttaagattcagtaggaattgtcgtgtaatataggcttgagaaattgaacgagc |
46762483 |
T |
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| Q |
148 |
actga |
152 |
Q |
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||||| |
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| T |
46762482 |
actga |
46762478 |
T |
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