View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3277_low_6 (Length: 487)

Name: NF3277_low_6
Description: NF3277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3277_low_6
NF3277_low_6
[»] chr7 (17 HSPs)
chr7 (245-470)||(6213149-6213374)
chr7 (246-470)||(6237597-6237821)
chr7 (1-249)||(6180999-6181247)
chr7 (246-470)||(6208298-6208522)
chr7 (245-470)||(6234716-6234941)
chr7 (1-249)||(6247820-6248068)
chr7 (246-470)||(6247536-6247760)
chr7 (246-470)||(6180715-6180939)
chr7 (248-469)||(6106331-6106552)
chr7 (245-470)||(6089159-6089384)
chr7 (1-175)||(6213433-6213607)
chr7 (293-470)||(6094526-6094703)
chr7 (1-216)||(6094828-6095043)
chr7 (1-95)||(6237881-6237975)
chr7 (1-95)||(6208582-6208676)
chr7 (1-84)||(6106614-6106697)
chr7 (1-193)||(6089443-6089635)


Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 245 - 470
Target Start/End: Complemental strand, 6213374 - 6213149
Alignment:
Q  245 ttgcaacatgatattgcaaaaagaataggtgtgaagcttgatgaagatgatgaaagaattagagcagaaaatttgtctttggcattgaagaaaaagggaa 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6213374 ttgcaacatgatattgcaaaaagaataggtgtgaagcttgatgaagatgatgaaagaattagagcagaaaatttgtctttggcattgaagaaaaagggaa 6213275  T
Q  345 aatcagttcttattttggatgatgtttggaaatatattgatttgcagaagttgggaattcatccagaagtaaatggcattaaagtgattttgacaactcg 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6213274 aatcagttcttattttggatgatgtttggaaatatattgatttgcagaagttgggaattcatccagaagtaaatggcattaaagtgattttgacaactcg 6213175  T
Q  445 tttggaacatgtatgttaccagatgg 470  Q
    ||||||||||||||||||||||||||    
T  6213174 tttggaacatgtatgttaccagatgg 6213149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 246 - 470
Target Start/End: Complemental strand, 6237821 - 6237597
Alignment:
Q  246 tgcaacatgatattgcaaaaagaataggtgtgaagcttgatgaagatgatgaaagaattagagcagaaaatttgtctttggcattgaagaaaaagggaaa 345  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6237821 tgcaacatgatatagcaaaaataataggtgtgaagcttgatgaagatgatgaaagaattagagcagaaaatttgtctttggcattggagaaaaagggaaa 6237722  T
Q  346 atcagttcttattttggatgatgtttggaaatatattgatttgcagaagttgggaattcatccagaagtaaatggcattaaagtgattttgacaactcgt 445  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| | |||| |||||||||||||||||||||||||||||     
T  6237721 atcaattcttattttggatgatgtttggaattatattgatttgcagaaggtgggaattcatcaaaaagtgaatggcattaaagtgattttgacaactcgg 6237622  T
Q  446 ttggaacatgtatgttaccagatgg 470  Q
    ||| ||||||||||| |||||||||    
T  6237621 ttgaaacatgtatgtcaccagatgg 6237597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 6180999 - 6181247
Alignment:
Q  1 ttccttttcacttcgttctccacgagagtcgccagtaaagtttttcctactcctcccattccatagatgccaatgacaaagactgtatcatcctcaagtc 100  Q
    |||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||     
T  6180999 ttcctttttacttcattctccacgagagttgcaagtaaagtttttcctactcctcccattccatatatgccaatgacaaagactttatcatcgtcaagtt 6181098  T
Q  101 gtttcaacactttacggatatttttatctaatctccccccgacaaattcagtcgacaaagtgagaggcttctttttcttgtgctgtttcatattgatgat 200  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||  | |||||||||||||||    
T  6181099 gtttcaacacttcacagatatttttatctaatctccccccgacaaattcagttgacaaagtgaaaggcttctttttcttgtaatctttcatattgatgat 6181198  T
Q  201 caacttatttatctcatgaatatcatctaagctattcatctcatttgca 249  Q
    |||||||||||||| |||||| |||||| |||||||||||| |||||||    
T  6181199 caacttatttatcttatgaatgtcatctgagctattcatcttatttgca 6181247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 246 - 470
Target Start/End: Complemental strand, 6208522 - 6208298
Alignment:
Q  246 tgcaacatgatattgcaaaaagaataggtgtgaagcttgatgaagatgatgaaagaattagagcagaaaatttgtctttggcattgaagaaaaagggaaa 345  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  6208522 tgcaaaatgatatagcaaaaagaataggtgtgaagcttgatgaagacgatgaaagaattagagcagaaaatttgtctctggcattggagaaaaagggaaa 6208423  T
Q  346 atcagttcttattttggatgatgtttggaaatatattgatttgcagaagttgggaattcatccagaagtaaatggcattaaagtgattttgacaactcgt 445  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| | |||| |||||||||||||||||||||||||||||     
T  6208422 atcaattcttattttggatgatgtttggaattatattgatttgcagaaggtgggaattcatcaaaaagtgaatggcattaaagtgattttgacaactcgg 6208323  T
Q  446 ttggaacatgtatgttaccagatgg 470  Q
    ||| ||||||||||| |||||||||    
T  6208322 ttgaaacatgtatgtcaccagatgg 6208298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 245 - 470
Target Start/End: Complemental strand, 6234941 - 6234716
Alignment:
Q  245 ttgcaacatgatattgcaaaaagaataggtgtgaagcttgatgaagatgatgaaagaattagagcagaaaatttgtctttggcattgaagaaaaagggaa 344  Q
    |||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||  |||||||||| |    
T  6234941 ttgcaacatgatatagcacaaagaatagatgtgaagcttgatgaagatgatgaaagaattagagcaaaaattttgtctttggcatttgagaaaaagggga 6234842  T
Q  345 aatcagttcttattttggatgatgtttggaaatatattgatttgcagaagttgggaattcatccagaagtaaatggcattaaagtgattttgacaactcg 444  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||    
T  6234841 aatcaattcttattttggatgatgtttggaaatatattgatttgcagaaggtgggaattcatccaaaagtgaatggcattaaagtgattttgacaactcg 6234742  T
Q  445 tttggaacatgtatgttaccagatgg 470  Q
     ||| ||||||||||| |||||||||    
T  6234741 gttgaaacatgtatgtcaccagatgg 6234716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 6247820 - 6248068
Alignment:
Q  1 ttccttttcacttcgttctccacgagagtcgccagtaaagtttttcctactcctcccattccatagatgccaatgacaaagactgtatcatcctcaagtc 100  Q
    |||||||| ||||| |||||||||||||| ||  ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||     
T  6247820 ttcctttttacttcattctccacgagagttgcatgtaaagtttttcctactcctcccattccatatatgccaatgacaaagactttatcatcgtcaagtt 6247919  T
Q  101 gtttcaacactttacggatatttttatctaatctccccccgacaaattcagtcgacaaagtgagaggcttctttttcttgtgctgtttcatattgatgat 200  Q
    |||||||||||||| |||| |||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||  |||||||||||  |||    
T  6247920 gtttcaacactttatggattttttcatctaatctccccccgacaaattcagttgacaaagtgaaaggcttctttttcttgtgtcgtttcatattgtcgat 6248019  T
Q  201 caacttatttatctcatgaatatcatctaagctattcatctcatttgca 249  Q
     || | ||||||||||||||| |||||| ||||||||||||||||||||    
T  6248020 gaaatgatttatctcatgaatgtcatctgagctattcatctcatttgca 6248068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 246 - 470
Target Start/End: Complemental strand, 6247760 - 6247536
Alignment:
Q  246 tgcaacatgatattgcaaaaagaataggtgtgaagcttgatgaagatgatgaaagaattagagcagaaaatttgtctttggcattgaagaaaaagggaaa 345  Q
    |||||||| |||| ||||||||||||||  |||||||||||||||||||||||| | ||||||| || || || |||||||||||| |||||||||||||    
T  6247760 tgcaacataatatagcaaaaagaataggcttgaagcttgatgaagatgatgaaaaagttagagctgacaacttatctttggcattggagaaaaagggaaa 6247661  T
Q  346 atcagttcttattttggatgatgtttggaaatatattgatttgcagaagttgggaattcatccagaagtaaatggcattaaagtgattttgacaactcgt 445  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| | |||||||||    
T  6247660 atcaattcttattttggatgatgtttggaaatatattgatttgaagaaggtgggaattcatccaaaagtaaatggcattaaagtgattctaacaactcgt 6247561  T
Q  446 ttggaacatgtatgttaccagatgg 470  Q
    ||| ||||||||||| |||||||||    
T  6247560 ttgaaacatgtatgtcaccagatgg 6247536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 246 - 470
Target Start/End: Complemental strand, 6180939 - 6180715
Alignment:
Q  246 tgcaacatgatattgcaaaaagaataggtgtgaagcttgatgaagatgatgaaagaattagagcagaaaatttgtctttggcattgaagaaaaagggaaa 345  Q
    |||||||||||||  |||||||||||||  |||||||||||||||||||||||| | ||||||| |  ||  |||||||||||||| |||||||||||||    
T  6180939 tgcaacatgatataacaaaaagaataggcttgaagcttgatgaagatgatgaaaaagttagagctggcaacctgtctttggcattggagaaaaagggaaa 6180840  T
Q  346 atcagttcttattttggatgatgtttggaaatatattgatttgcagaagttgggaattcatccagaagtaaatggcattaaagtgattttgacaactcgt 445  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| | |||||||||    
T  6180839 atcaattcttattttggatgatgtttggaaatatattgatttgaagaaggtgggaattcatccaaaagtaaatggcattaaagtgattctaacaactcgt 6180740  T
Q  446 ttggaacatgtatgttaccagatgg 470  Q
    ||| ||||||||||| |||||||||    
T  6180739 ttgaaacatgtatgtcaccagatgg 6180715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 248 - 469
Target Start/End: Complemental strand, 6106552 - 6106331
Alignment:
Q  248 caacatgatattgcaaaaagaataggtgtgaagcttgatgaagatgatgaaagaattagagcagaaaatttgtctttggcattgaagaaaaagggaaaat 347  Q
    ||||||||||| ||||||||||||||  |||||||||||| ||||||||||||| ||||||| || || ||||||| || |||| |||||||||||||||    
T  6106552 caacatgatatagcaaaaagaataggcttgaagcttgatgcagatgatgaaagagttagagctgacaacttgtcttcggtattggagaaaaagggaaaat 6106453  T
Q  348 cagttcttattttggatgatgtttggaaatatattgatttgcagaagttgggaattcatccagaagtaaatggcattaaagtgattttgacaactcgttt 447  Q
    || |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||| |||||||||||||||||| | ||||| |||||    
T  6106452 caattcttattttggatgatgtttggaaatatattgatttgcagaaggtaggaattcatccaaaagtgaatggcattaaagtgattctaacaacacgttt 6106353  T
Q  448 ggaacatgtatgttaccagatg 469  Q
    | ||||||||||| ||||||||    
T  6106352 gaaacatgtatgtgaccagatg 6106331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 245 - 470
Target Start/End: Complemental strand, 6089384 - 6089159
Alignment:
Q  245 ttgcaacatgatattgcaaaaagaataggtgtgaagcttgatgaagatgatgaaagaattagagcagaaaatttgtctttggcattgaagaaaaagggaa 344  Q
    |||||||| ||||| ||||||||||| |||||||||||||||||||| ||||| | |||| ||||||| || ||||| | |||| || |||||||| |||    
T  6089384 ttgcaacacgatatcgcaaaaagaattggtgtgaagcttgatgaagacgatgagaaaattggagcagataacttgtcatcggcactgcagaaaaagcgaa 6089285  T
Q  345 aatcagttcttattttggatgatgtttggaaatatattgatttgcagaagttgggaattcatccagaagtaaatggcattaaagtgattttgacaactcg 444  Q
    |||||||| ||||||||||||||||||||||||| ||||||||| | ||| ||||||||||| || | || ||||| |||||||| ||| ||||||||||    
T  6089284 aatcagttattattttggatgatgtttggaaatacattgatttggaaaaggtgggaattcatacaaaggtgaatggtattaaagtaattctgacaactcg 6089185  T
Q  445 tttggaacatgtatgttaccagatgg 470  Q
    |||| ||| ||| ||| | |||||||    
T  6089184 tttgaaacttgtgtgtcaacagatgg 6089159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 6213433 - 6213607
Alignment:
Q  1 ttccttttcacttcgttctccacgagagtcgccagtaaagtttttcctactcctcccattccatagatgccaatgacaaagactgtatcatcctcaagtc 100  Q
    |||||||| ||||| || ||||||||||| || |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||  ||||      
T  6213433 ttcctttttacttcattttccacgagagttgcaagtaaagtttttcccactcctcccattccatatatgccaatgacaaagactttatcatcagcaagga 6213532  T
Q  101 gtttcaacactttacggatatttttatctaatctccccccgacaaattcagtcgacaaagtgagaggcttctttt 175  Q
    |||||||||||| | ||||||||| || |||| ||  ||||||||||||||||| ||||||||||||||| ||||    
T  6213533 gtttcaacacttcatggatattttcatttaatttcgacccgacaaattcagtcggcaaagtgagaggcttatttt 6213607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 293 - 470
Target Start/End: Complemental strand, 6094703 - 6094526
Alignment:
Q  293 gatgaaagaattagagcagaaaatttgtctttggcattgaagaaaaagggaaaatcagttcttattttggatgatgtttggaaatatattgatttgcaga 392  Q
    ||||| ||| |||| ||| ||| |||||||||||| ||| ||| ||||||||| ||| |||||||| | || |||||||||||||| ||||||||||| |    
T  6094703 gatgagagagttagggcaaaaactttgtctttggcgttggagacaaagggaaattcaattcttattctagacgatgtttggaaatacattgatttgcaaa 6094604  T
Q  393 agttgggaattcatccagaagtaaatggcattaaagtgattttgacaactcgtttggaacatgtatgttaccagatgg 470  Q
    || ||||||||| || | | || ||||  |||||||||||| | |||||||||||| ||||||| ||| || ||||||    
T  6094603 aggtgggaattcctctaaatgtgaatgtaattaaagtgattctaacaactcgtttgaaacatgtgtgtcacgagatgg 6094526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 6094828 - 6095043
Alignment:
Q  1 ttccttttcacttcgttctccacgagagtcgccagtaaagtttttcctactcctcccattccatagatgccaatgacaaagactgtatcatcctcaagtc 100  Q
    |||||||| ||||| |||||||| ||||| || |||||||||||||| |||||||||||||||| ||| ||||| ||||| ||    || ||||| ||      
T  6094828 ttcctttttacttcattctccacaagagttgcaagtaaagtttttcccactcctcccattccatggataccaataacaaatacatcgtcttcctctagaa 6094927  T
Q  101 gtttcaacactttacggatatttttatctaatctccccccgacaaattcagtcgacaaagtgagaggcttctttttcttgtgctgtttcatattgatgat 200  Q
    || |||||||||    ||||||| | | |||| |  | || |||||||||||||||||| |||||||||| | |||||||||  |||||||||   ||||    
T  6094928 gtctcaacacttggtcgatatttatgtataatgtttctccaacaaattcagtcgacaaaatgagaggcttttctttcttgtgtcgtttcatatctttgat 6095027  T
Q  201 caacttatttatctca 216  Q
    ||| ||||||| ||||    
T  6095028 caatttatttacctca 6095043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 6237881 - 6237975
Alignment:
Q  1 ttccttttcacttcgttctccacgagagtcgccagtaaagtttttcctactcctcccattccatagatgccaatgacaaagactgtatcatcctc 95  Q
    |||||||| ||||| |||||||||||||| || |||||||||||||| ||||||||||||||| | |||||||| ||||| ||| ||| ||||||    
T  6237881 ttcctttttacttcattctccacgagagttgcaagtaaagtttttccgactcctcccattccacatatgccaataacaaacactttattatcctc 6237975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 6208582 - 6208676
Alignment:
Q  1 ttccttttcacttcgttctccacgagagtcgccagtaaagtttttcctactcctcccattccatagatgccaatgacaaagactgtatcatcctc 95  Q
    |||||||| ||||| |||||||| ||||| || |||||||||||||| ||||||||||||||| | |||||||  ||||| ||| ||||||||||    
T  6208582 ttcctttttacttcattctccacaagagttgcaagtaaagtttttccgactcctcccattccacatatgccaacaacaaacactttatcatcctc 6208676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 6106614 - 6106697
Alignment:
Q  1 ttccttttcacttcgttctccacgagagtcgccagtaaagtttttcctactcctcccattccatagatgccaatgacaaagact 84  Q
    ||||||||  |||| |||||||||||||| || |||||||||||||| || |||||||||||| | |||||||| |||||||||    
T  6106614 ttcctttttccttccttctccacgagagttgcaagtaaagtttttcccacacctcccattccacatatgccaattacaaagact 6106697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 6089443 - 6089635
Alignment:
Q  1 ttccttttcacttcgttctccacgagagtcgccagtaaagtttttcctactcctcccattccatagatgccaatgacaaagactgtatcatcctcaagtc 100  Q
    |||||||| ||||| ||||| |||||||| || |||||||||||||| ||||| ||||||||||| || ||||| ||||| |||   |||||||| ||      
T  6089443 ttcctttttacttcattctcgacgagagttgcaagtaaagtttttcccactccccccattccatatataccaataacaaaaacttggtcatcctctagaa 6089542  T
Q  101 gtttcaacactttacggatatttttatctaatctccccccgacaaattcagtcgacaaagtgagaggcttctttttcttgtgctgtttcatat 193  Q
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T  6089543 gtttaagcactttcctgatattaaagtctaatgctttcccaacaaattctgtcgacaaagtgagaggtttttcttccttgtgtcgtttcatat 6089635  T

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