View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3277_low_7 (Length: 473)
Name: NF3277_low_7
Description: NF3277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3277_low_7 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 42238813 - 42239274
Alignment:
| Q |
1 |
aatagagattgttatgtttgatgaagaccaaccacaagaagttgatgacaccaacatttcagatatagagtttgactttgaagaaaatgttcaaccagtt |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42238813 |
aatagagattgttatgtttgacgaagaccaaccacaagaagttgatgacaccaacatttcagatatagagtttgactttgaagaaaatgttcaaccagtt |
42238912 |
T |
|
| Q |
101 |
gatgagagtgaacttgaaggagtacttaattctgatggtaatgtatttcttctttattcaatttgattcaaatttgtgttatcatttgttaggagtaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42238913 |
gatgagagtgaacttgaaggagtacttaattctgatggtaatgtatttcttctttattcaatttgattcaaatttgtgttatcatttgttaggagtaatt |
42239012 |
T |
|
| Q |
201 |
atacaatatgcatttgaatatgaaggaacaaataatggacgcaagtttttaagcaacgaagagcgtacggccgtcgcttatcttcttttgcagcacaact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
42239013 |
atacaatatgcatttgaatatgaaggaacaaataatggacgcaaatttttaagcaatgaagagcgtaaggccgtcgcttatcttcttttgcagcacaact |
42239112 |
T |
|
| Q |
301 |
atgaaggatgactgaaaaaagggactagaaaattgattgtgtcaatgtattcggtctctgttagtgtcattaaacatatttggaagagagcaaaactcac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42239113 |
atgaaggatgactgaaaaaagggactagaaaattgattgtgtcaatgtattcggtctctgttagtgtcattaaacatatttggaagagagcaaaactcac |
42239212 |
T |
|
| Q |
401 |
agcaggagatgtgtctcatacaaaaacaacaatttctgggcgaaaaaggattcaattttgat |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42239213 |
agcaggagatgtgtctcatacaaaaacaacaatttctgggcgaaaaaggattcaattttgat |
42239274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 17649408 - 17649858
Alignment:
| Q |
1 |
aatagagattgttatgtttgatgaagaccaaccacaagaagttgatgacaccaacatttcagatatagagtttgactttgaagaaaatgttcaaccagtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
17649408 |
aatagagattgttatgtttgatgaagaccaaccacaagaagtttatgacaccaacattgcagatatagagtatgactttgaagaaaatgttcaacatgtt |
17649507 |
T |
|
| Q |
101 |
gatgagagtgaacttgaaggagtacttaattctgatggtaatgtatttcttctttattcaatttgattcaaatttgtgttatcatttgttaggagtaatt |
200 |
Q |
| |
|
||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17649508 |
gatgagagtgaacctgaaggagtccttaatgctgatggtaatgtatttcttctttatttaatttgattcaaatttttgttatcatttgttaggagtaatt |
17649607 |
T |
|
| Q |
201 |
at--acaatatgcatttgaatatgaaggaacaaataatggacgcaagtttttaagcaacgaagagcgtacggccgtcgcttatcttcttttgcagcacaa |
298 |
Q |
| |
|
|| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||| ||| |||||||||||||||||| |
|
|
| T |
17649608 |
atacacaatatgcatttaaatatgaaggaacagataatggacgcaagtttttaagcaacgaagagtgtaaggccgttgctcatcttcttttgcagcacag |
17649707 |
T |
|
| Q |
299 |
ctatgaaggatgactgaaaaaagggactagaaaattgattgtgtcaatgtattcggtctctgttagtgtcattaaacatatttggaagagagcaaaactc |
398 |
Q |
| |
|
| ||| | || |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
17649708 |
ccatgcaagaagactgaaaaaagggactagaaaattgattgcgtcaatgtattcagtctctgttagtgtcattaaacgtatttggaagagagaaaaactc |
17649807 |
T |
|
| Q |
399 |
acagcaggagatgtgtctcatacaaaaacaacaatttctgggcgaaaaaggatt |
452 |
Q |
| |
|
| |||||||||||||||||| |||||||||| || |||||||||||||||| |
|
|
| T |
17649808 |
a---caggagatgtgtctcataggaaaacaacaaattgtgggcgaaaaaggatt |
17649858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 1328209 - 1328659
Alignment:
| Q |
1 |
aatagagattgttatgtttgatgaagaccaaccacaagaagttgatgacaccaacatttcagatatagagtttgactttgaagaaaatgttcaaccagtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||| |||||||||| ||| |
|
|
| T |
1328209 |
aatagagattgttatgtttgatgaagaccaaccacaagaagtttatgacaccaacattgcagatatagagtatgactttgaagataatgttcaacatgtt |
1328308 |
T |
|
| Q |
101 |
gatgagagtgaacttgaaggagtacttaattctgatggtaatgtatttcttctttattcaatttgattcaaatttgtgttatcatttgttaggagtaatt |
200 |
Q |
| |
|
|||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
1328309 |
aatgagagtgaacctgaaggagtccttaatgctgatggtaatgtatttcttctttatttaatttcattcaaatttttgttatcatttgttaggagtaatt |
1328408 |
T |
|
| Q |
201 |
ataca--atatgcatttgaatatgaaggaacaaataatggacgcaagtttttaagcaacgaagagcgtacggccgtcgcttatcttcttttgcagcacaa |
298 |
Q |
| |
|
| ||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||| | ||| ||||||||||||||||||| |
|
|
| T |
1328409 |
acacacaatatgcatttcaatatgaaggaacagataatggacgcaagtttttaagcaacgaagagcgtaaggccattgctcatcttcttttgcagcacaa |
1328508 |
T |
|
| Q |
299 |
ctatgaaggatgactgaaaaaagggactagaaaattgattgtgtcaatgtattcggtctctgttagtgtcattaaacatatttggaagagagcaaaactc |
398 |
Q |
| |
|
| ||| |||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1328509 |
ccatgtaggaagactgaaaaaagggactagaaaattgattgcgtcaatgtattcagtctctgttagtgtcattaaacgtatttggaagagagcaaaactc |
1328608 |
T |
|
| Q |
399 |
acagcaggagatgtgtctcatacaaaaacaacaatttctgggcgaaaaaggatt |
452 |
Q |
| |
|
| |||||||||||||||||| |||||||||| || |||||||||||||||| |
|
|
| T |
1328609 |
a---caggagatgtgtctcataggaaaacaacaaattgtgggcgaaaaaggatt |
1328659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 452
Target Start/End: Complemental strand, 42541346 - 42540896
Alignment:
| Q |
1 |
aatagagattgttatgtttgatgaagaccaaccacaagaagttgatgacaccaacatttcagatatagagtttgactttgaagaaaatgttcaaccagtt |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||| |||||||||| ||| |
|
|
| T |
42541346 |
aatatagattgttatgtttgatgaagaccaaccacaagaagtttatgacaccaacattgcagatatagagtatgactttgaagataatgttcaacatgtt |
42541247 |
T |
|
| Q |
101 |
gatgagagtgaacttgaaggagtacttaattctgatggtaatgtatttcttctttattcaatttgattcaaatttgtgttatcatttgttaggagtaatt |
200 |
Q |
| |
|
|||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
42541246 |
aatgagagtgaacctgaaggagtccttaatgctgatggtaatgtatttcttctttatttaatttcattcaaatttttgttatcatttgttaggagtaatt |
42541147 |
T |
|
| Q |
201 |
ataca--atatgcatttgaatatgaaggaacaaataatggacgcaagtttttaagcaacgaagagcgtacggccgtcgcttatcttcttttgcagcacaa |
298 |
Q |
| |
|
| ||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||| | ||| |||||||||||||||||| |
|
|
| T |
42541146 |
acacacaatatgcatttcaatatgaaggaacagataatggacgcaagtttttaagcaacgaagagcgtaaggccattgctcatcttcttttgcagcacag |
42541047 |
T |
|
| Q |
299 |
ctatgaaggatgactgaaaaaagggactagaaaattgattgtgtcaatgtattcggtctctgttagtgtcattaaacatatttggaagagagcaaaactc |
398 |
Q |
| |
|
| ||| |||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42541046 |
ccatgcaggaagactgaaaaaagggactagaaaattgattgcgtcaatgtattcagtctctgttagtgtcattaaacgtatttggaagagagcaaaactc |
42540947 |
T |
|
| Q |
399 |
acagcaggagatgtgtctcatacaaaaacaacaatttctgggcgaaaaaggatt |
452 |
Q |
| |
|
| |||||||||||||||||| |||||||||| || |||||||||||||||| |
|
|
| T |
42540946 |
a---caggagatgtgtctcataggaaaacaacaaattgtgggcgaaaaaggatt |
42540896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 4745594 - 4745952
Alignment:
| Q |
1 |
aatagagattgttatgtttgatgaagaccaaccacaagaagttgatgacaccaacatttcagatatagagtttgactttgaagaaaatgttcaaccagtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
4745594 |
aatagagattgttatgtttgatgaagaccaaccacaagaagtttatgacaccaacattgcagatatagagtatgactttgaagaaaatgttcaacatgtt |
4745693 |
T |
|
| Q |
101 |
gatgagagtgaacttgaaggagtacttaattctgatggtaatgtatttcttctttattcaatttgattcaaatttgtgttatcatttgttaggagtaatt |
200 |
Q |
| |
|
||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4745694 |
gatgagagtgaacctgaaggagtccttaatgctgatggtaatgtatttcttctttatttaatttgattcaaatttttgttatcatttgttaggagtaatt |
4745793 |
T |
|
| Q |
201 |
at--acaatatgcatttgaatatgaaggaacaaataatggacgcaagtttttaagcaacgaagagcgtacggccgtcgcttatcttcttttgcagcacaa |
298 |
Q |
| |
|
|| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||| | ||| |||||||||||||||||| |
|
|
| T |
4745794 |
atacacaatatgcatttcaatatgaaggaacagataatggacgcaagtttttaagcaacgaagagcgtaaggccattgctcatcttcttttgcagcacag |
4745893 |
T |
|
| Q |
299 |
ctatgaaggatgactgaaaaaagggactagaaaattgattgtgtcaatgtattcggtct |
357 |
Q |
| |
|
| ||| |||| |||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
4745894 |
ccatgcaggaagactgaaaaaagggactagaaaattgattgcgtcaatgtattcagtct |
4745952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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