View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3277_low_8 (Length: 466)
Name: NF3277_low_8
Description: NF3277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3277_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 23 - 461
Target Start/End: Original strand, 54479156 - 54479593
Alignment:
| Q |
23 |
accgttcacagctacaaatatctcttgcaaaatagaatagttaatatcaccggagctgttcagtgcaagaaatgcaaagaaaagttccaaatgtcttttg |
122 |
Q |
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| T |
54479156 |
accgttcacagctacaaatatctcttgcaaaatagaatagttaatatcaccggagctgttccgtgcaagaaatgcaaagaaaagttccaaatgtcttttc |
54479255 |
T |
|
| Q |
123 |
atttgagagaaaaggttcctgaaatattgaagtttgttaccgaaaacaggaacgacatgcatgacagggcgccaaccatttggatgaagccaacattgcc |
222 |
Q |
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| T |
54479256 |
atttgagagaaaaggttcctgaaatattgaagtttgttaccgaaaacaggaacgacatgcatgacagggcgccaaccatttggatgaagccaacattgcc |
54479355 |
T |
|
| Q |
223 |
taattgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaagaaacggagtatcaactggctgtttctgttattaggacaaatgctt |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54479356 |
taattgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaagaaacggagtatcaactggctgtttctgttattaggacaaatgctt |
54479455 |
T |
|
| Q |
323 |
ggctgctgcacgcgtaaacagctgaagtatttctgcaaacacaccaagaatcatgaatcaggtgccaagaatagagttctttatttaacttatcttggac |
422 |
Q |
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| T |
54479456 |
ggctgctgcacgcgtaaacagctgaagtatttctgcaaacacaccaagaatcatgaatcaggtgccaagaatagagttctttatttaacttatcttggac |
54479555 |
T |
|
| Q |
423 |
tcttgcaaacaacttgatcatcccagaccctttgctact |
461 |
Q |
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| T |
54479556 |
tc-tgcaaacaacttgatcatcccagaccctttgatact |
54479593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 200 - 441
Target Start/End: Complemental strand, 25044551 - 25044311
Alignment:
| Q |
200 |
atttggatgaagccaacattgcctaattgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaagaaacggagtatcaactggctgt |
299 |
Q |
| |
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| T |
25044551 |
attttgatgaatccaagattgccaagatgtgtgcattgcaacaaagaaaacagtgtgaagccgataattgccgagaagaagaagaatatcaattggttgt |
25044452 |
T |
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| Q |
300 |
ttctgttattaggacaaatgcttggctgctgcacgcgtaaacagctgaagtatttctgcaaacacaccaagaatcatgaatcaggtgccaagaatagagt |
399 |
Q |
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||||| | || ||||||||||| || || |||| | |||||| |||||||||| ||||| | | ||| ||||| | |||||||||| ||||| || |
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| T |
25044451 |
ttctgctgttgggacaaatgctgggttgttgcaatcttaaacaattgaagtatttttgcaagtataacaaccatcatagaacaggtgccaaaaatagggt |
25044352 |
T |
|
| Q |
400 |
tctttatttaacttatcttggactcttgcaaacaacttgatc |
441 |
Q |
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| T |
25044351 |
tctttatttaacttatcttgaact-atgcaaacaacttgatc |
25044311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 415
Target Start/End: Complemental strand, 25040835 - 25040598
Alignment:
| Q |
178 |
catgcatgacagggcgccaaccatttggatgaagccaacattgcctaattgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaag |
277 |
Q |
| |
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| T |
25040835 |
catgcatgatagggcaccacaaattttgatgaatccaaaattgccaaaatgtttgcattgcaatcaagaaaatagtgttaaaccggtgattgctgagaag |
25040736 |
T |
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| Q |
278 |
aaacggagtatcaactggctgtttctgttattaggacaaatgcttggctgctgcacgcgtaaacagctgaagtatttctgcaaacacaccaagaatcatg |
377 |
Q |
| |
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||| || |||||| ||| |||||||||| | |||||||| |||| || |||| || | |||| |||||||||| ||||| ||| | ||||| |
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| T |
25040735 |
aaaaagaatatcaattggttgtttctgttgctgggacaaataattggttgttgcaagcttgaacaattgaagtatttttgcaagtacaacggtcatcatc |
25040636 |
T |
|
| Q |
378 |
aatcaggtgccaagaatagagttctttatttaacttat |
415 |
Q |
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| | |||||||||||||||||||||||||| |||||| |
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| T |
25040635 |
gagctggtgccaagaatagagttctttatttgacttat |
25040598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 127
Target Start/End: Complemental strand, 25040971 - 25040886
Alignment:
| Q |
42 |
atctcttgcaaaatagaatagttaatatcaccggagctgttcagtgcaagaaatgcaaagaaaagttccaaatgtcttttgatttg |
127 |
Q |
| |
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||||||| ||||| ||||| |||| |||||||| | |||||| ||||| | |||||| ||||||||||||||||||||||||| |
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| T |
25040971 |
atctcttacaaaacagaatctttaacatcaccggcgatgttcaatgcaatagttgcaaaacaaagttccaaatgtcttttgatttg |
25040886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 227 - 441
Target Start/End: Complemental strand, 10124400 - 10124187
Alignment:
| Q |
227 |
tgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaagaaacggagtatcaactggctgtttctgttattaggacaaatgcttggct |
326 |
Q |
| |
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|||||||| || |||||| ||||| ||||||| |||||||||||||| |||||| || |||||| ||| |||||||||| |||||||||||||||| | |
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| T |
10124400 |
tgtgtgcattgcaatcaagaaaactgtgtgaaaccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggtt |
10124301 |
T |
|
| Q |
327 |
gctgcacgcgtaaacagctgaagtatttctgcaaacacaccaagaatcatgaatcaggtgccaagaatagagttctttatttaacttatcttggactctt |
426 |
Q |
| |
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| || | || | |||| |||| ||||| ||||| | | | ||||| | | |||||||||||||| |||||||||||||||||||||| ||| || |
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| T |
10124300 |
gttgtaagcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaagaatagggttctttatttaacttatcttgaact-tt |
10124202 |
T |
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| Q |
427 |
gcaaacaacttgatc |
441 |
Q |
| |
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||||||||||||||| |
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| T |
10124201 |
gcaaacaacttgatc |
10124187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 443
Target Start/End: Complemental strand, 28649982 - 28649786
Alignment:
| Q |
246 |
aaaacagtgtgaagccggtaattgctgacaagaaacggagtatcaactggctgtttctgttattaggacaaatgcttggctgctgcacgcgtaaacagct |
345 |
Q |
| |
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|||||| |||||||||| |||||||||| |||||| || ||| || ||| ||||| |||| || |||||||||||||| || |||| | |||||| | |
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| T |
28649982 |
aaaacaatgtgaagccgataattgctgagaagaaaaagaatattaattggttgtttttgttgttgggacaaatgcttggttgttgcaatcttaaacaatt |
28649883 |
T |
|
| Q |
346 |
gaagtatttctgcaaacacaccaagaatcatgaatcaggtgcc-aagaatagagttctttatttaacttatcttggactcttgcaaacaacttgatcat |
443 |
Q |
| |
|
||||||||| ||||| | | ||| ||||| | || |||| || |||||||||||||||||||||||||||| ||| |||||| ||||||||||| |
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| T |
28649882 |
gaagtatttttgcaagtataacaaccatcatagaaca-atgccaaaaaatagagttctttatttaacttatcttgaact-atgcaaataacttgatcat |
28649786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 239 - 415
Target Start/End: Original strand, 21393068 - 21393244
Alignment:
| Q |
239 |
aatcaacaaaacagtgtgaagccggtaattgctgacaagaaacggagtatcaactggctgtttctgttattaggacaaatgcttggctgctgcacgcgta |
338 |
Q |
| |
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|||||| ||||||||||||| ||||||||||| || |||||| || |||||| ||| ||||||| || | ||||||||||| || || |||| || | |
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| T |
21393068 |
aatcaagaaaacagtgtgaaaccggtaattgccgagaagaaaaagaatatcaattggttgtttctattgctgggacaaatgctcggttgttgcaagcttg |
21393167 |
T |
|
| Q |
339 |
aacagctgaagtatttctgcaaacacaccaagaatcatgaatcaggtgccaagaatagagttctttatttaacttat |
415 |
Q |
| |
|
|||| |||||||||| ||||| ||| ||| ||||| | | |||||||||||||||||||||||||| |||||| |
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|
| T |
21393168 |
aacaattgaagtatttttgcaagtacaacaatcatcatcgaaccggtgccaagaatagagttctttatttgacttat |
21393244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 333
Target Start/End: Complemental strand, 1975327 - 1975173
Alignment:
| Q |
179 |
atgcatgacagggcgccaaccatttggatgaagccaacattgcctaattgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaaga |
278 |
Q |
| |
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|||| ||| ||||| ||||| ||||| ||| | |||| ||||||||| ||||| || || |||||| |||| |||||||| || ||||||||| | |||| |
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| T |
1975327 |
atgcgtgatagggcaccaacaatttgaatgcatccaatattgcctaaatgtgtacattgcaatcaaaaaaatagtgtgaaacctgtaattgctaagaaga |
1975228 |
T |
|
| Q |
279 |
aacggagtatcaactggctgtttctgttattaggacaaatgcttggctgctgcac |
333 |
Q |
| |
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|| ||||||||| ||| ||||| |||| | |||||||||||||| || ||||| |
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| T |
1975227 |
aaaagagtatcaattggttgtttatgttgatgggacaaatgcttggttgttgcac |
1975173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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