View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3278_high_2 (Length: 378)
Name: NF3278_high_2
Description: NF3278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3278_high_2 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 12 - 378
Target Start/End: Original strand, 893264 - 893630
Alignment:
| Q |
12 |
cacttcaaacattctgcggcaaacagttaacaagtcgatttcacagcaatctgtttggagattgctggttatggtcacataattttgaagttgttttatc |
111 |
Q |
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| T |
893264 |
cacttcaaacattctgcggcaaacagttaacaattcaatttcacagcaatctgtttggagattgctggttatggtcacataattttgaaattgttttatc |
893363 |
T |
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| Q |
112 |
tacttgttctaaaggtttcaagaacaccaaaggacagtaagatgttttagcttaattcaaaaacatatatcaggtttgagattgagccactaggcatcaa |
211 |
Q |
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| T |
893364 |
tacttgttctaaaggtttcaagaacaccaaaggacagtaagatgttttagcttaattcaaaaacatatattaggtttgagattgagccactaggcatcaa |
893463 |
T |
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| Q |
212 |
gagctccagaaaaacagttgttatggtattccgtgttcgggactccaaggacacacatgcgagattttcaataactcttgaagcatcttgtatcacacct |
311 |
Q |
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| T |
893464 |
gagctccagaaaaacagttgttatggtattccgtgttcgggactccaaggacacacatgcgagattttcaataactcttgaagcatcttgtatcacacct |
893563 |
T |
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| Q |
312 |
agcaggctcttgtaggaatacaagaacttggcaggaagtaaacaatcttctacaatttctctaaatt |
378 |
Q |
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| T |
893564 |
agcaggctcttgtaggaatacaagaacttggcaggaagtaaacaatcttctacaatttctctaaatt |
893630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 363
Target Start/End: Complemental strand, 901978 - 901909
Alignment:
| Q |
294 |
gcatcttgtatcacacctagcaggctcttgtaggaatacaagaacttggcaggaagtaaacaatcttcta |
363 |
Q |
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| T |
901978 |
gcatctcgtttcacaactagcaggctcttgtagaaacccttgaacttgacaggaagtaaacaagcttcta |
901909 |
T |
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