View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3278_high_4 (Length: 301)
Name: NF3278_high_4
Description: NF3278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3278_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 25 - 287
Target Start/End: Complemental strand, 38568826 - 38568564
Alignment:
| Q |
25 |
taaattaattacaggtttctttgaaatatgtatatttggcagtaggatctggggtggcagcatttcttcgtaagtataatatatttgtattaattaagat |
124 |
Q |
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| T |
38568826 |
taaattaattacaggtttctttgaaatatgtatatttggcagtaggatctggggtggcagcatttcttcgtaagtataatatatttgtattaattaagat |
38568727 |
T |
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| Q |
125 |
gatgaannnnnnngtatatgaagaaaagacactaaacttgtgagaaattgtttttgtattttcagaggtgagttgttggatggttacaggagaaagacaa |
224 |
Q |
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| T |
38568726 |
gatgaatttttttgtatatgaagaaaagacactaaacttgtgagaaattgtttttgtattttcagaggtgagttgttggatggttacaggagaaagacaa |
38568627 |
T |
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| Q |
225 |
gctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgat |
287 |
Q |
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| T |
38568626 |
gctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgat |
38568564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 26 - 287
Target Start/End: Complemental strand, 38527522 - 38527263
Alignment:
| Q |
26 |
aaattaattacaggtttctttgaaatatgtatatttggcagtaggatctggggtggcagcatttcttcgtaagtataatatatttgta-ttaatt-aaga |
123 |
Q |
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| T |
38527522 |
aaattgattacaggtgtctttgaaatttgtatatttggcagtaggatctggggtggcagcatttctccgtaagtatagtat-tttgtaattaatttaaga |
38527424 |
T |
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| Q |
124 |
tgatgaannnnnnngtatatgaagaaaagacactaaacttgtgagaaattgtttttgtattttcagaggtgagttgttggatggttacaggagaaagaca |
223 |
Q |
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| T |
38527423 |
tgatgaatttttttgtatatgaagaaaagacactaaacttatgataa-ttgttt--gtattttcagaggtgagttgttggatggtaacaggagaaagaca |
38527327 |
T |
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| Q |
224 |
agctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgat |
287 |
Q |
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| T |
38527326 |
agctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgat |
38527263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 232
Target Start/End: Original strand, 5821051 - 5821085
Alignment:
| Q |
198 |
tgttggatggttacaggagaaagacaagctgcaag |
232 |
Q |
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| T |
5821051 |
tgttggatggtgacaggagaaagacaagctgcaag |
5821085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 232
Target Start/End: Complemental strand, 5833701 - 5833667
Alignment:
| Q |
198 |
tgttggatggttacaggagaaagacaagctgcaag |
232 |
Q |
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| T |
5833701 |
tgttggatggtaacaggagaaagacaagctgcaag |
5833667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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