View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3278_high_7 (Length: 252)
Name: NF3278_high_7
Description: NF3278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3278_high_7 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 5214553 - 5214786
Alignment:
| Q |
1 |
aggtgagatccctattgagatttccaacatgtcaagtcttaaaattctggatatttctcaaaacaagttaattggatcaatcccaaagttaagtggtttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5214553 |
aggtgagatccctattgagatttccaacatgtcaagtcttaaaattctggatctttctcaaaacaagttaattggatcaatcccaaagttaagtggtttg |
5214652 |
T |
|
| Q |
101 |
acagttcttaggttcttgtatttgcaaaagaataatctctctggatcaataccatctgaactctctgaaggctcacaactacaacttctagatttgaggg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5214653 |
acagttcttaggttcttgtatttgcaaaagaataatctctctggctcgataccatctgaactctctgaaggctcacaactacaacttctagatttgaggg |
5214752 |
T |
|
| Q |
201 |
agaataaattttcaggtaaaattccccactggat |
234 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
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|
| T |
5214753 |
agaacaaattttcaggtaaaattccccactggat |
5214786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 4856361 - 4856128
Alignment:
| Q |
1 |
aggtgagatccctattgagatttccaacatgtcaagtcttaaaattctggatatttctcaaaacaagttaattggatcaatcccaaagttaagtggtttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| | ||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |
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|
| T |
4856361 |
aggtgagatccctattgagatttccaacatgtccagtctttatattttggatctttctcaaaacaagttagttggagcaatcccaaagttaagtggtttg |
4856262 |
T |
|
| Q |
101 |
acagttcttaggttcttgtatttgcaaaagaataatctctctggatcaataccatctgaactctctgaaggctcacaactacaacttctagatttgaggg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
4856261 |
acagttcttaggttcttgtatttgcaaaagaataatctccctggatcaataccatctgaactctctaaaggctcacaactacaacttctagatttgaggg |
4856162 |
T |
|
| Q |
201 |
agaataaattttcaggtaaaattccccactggat |
234 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
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|
| T |
4856161 |
agaacaaattttcaggtaaaattccccactggat |
4856128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 5182990 - 5183215
Alignment:
| Q |
1 |
aggtgagatccctattgagatttccaacatgtcaagtcttaaaattctggatatttctcaaaacaagttaattggatcaatcccaaagttaagtggtttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | |||| |||| ||||| |||||||||||||||||| |||||| ||||||||||| ||| ||||| |
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|
| T |
5182990 |
aggtgagatccctattgagatttccaacatggccattcttcaaatgttggatctttctcaaaacaagttaaatggatcgatcccaaagttcagtagtttg |
5183089 |
T |
|
| Q |
101 |
acagttcttaggttcttgtatttgcaaaagaataatctctctggatcaataccatctgaactctctgaaggctcacaactacaacttctagatttgaggg |
200 |
Q |
| |
|
||| ||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
5183090 |
acatctctaaggttcttgtatttgcaatagaatgatctctctggatcaataccatctgaactctctgaaggctcacaactacaacttctagatttaaggg |
5183189 |
T |
|
| Q |
201 |
agaataaattttcaggtaaaattccc |
226 |
Q |
| |
|
| || ||||||||||||||||||||| |
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|
| T |
5183190 |
acaacaaattttcaggtaaaattccc |
5183215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 4841864 - 4841639
Alignment:
| Q |
1 |
aggtgagatccctattgagatttccaacatgtcaagtcttaaaattctggatatttctcaaaacaagttaattggatcaatcccaaagttaagtggtttg |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || | ||| | ||| ||||| ||||||||||||||||||||||| ||||||||||||| ||| |||| |
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|
| T |
4841864 |
aggtcagatccctattgagatttccaacatgccatggcttcatattttggatctttctcaaaacaagttaattggagcaatcccaaagttgagtagtttt |
4841765 |
T |
|
| Q |
101 |
acagttcttaggttcttgtatttgcaaaagaataatctctctggatcaataccatctgaactctctgaaggctcacaactacaacttctagatttgaggg |
200 |
Q |
| |
|
| | ||| |||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
4841764 |
aaatatctaaggttcttgtatttgcaacagaatgatctctctggatcaaagccatctgaactctctgaaggctcaaaactacaacttctagatttgaggg |
4841665 |
T |
|
| Q |
201 |
agaataaattttcaggtaaaattccc |
226 |
Q |
| |
|
|||| ||| ||||||||||||||||| |
|
|
| T |
4841664 |
agaacaaactttcaggtaaaattccc |
4841639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 5196396 - 5196629
Alignment:
| Q |
1 |
aggtgagatccctattgagatttccaacatgtcaagtcttaaaattctggatatttctcaaaacaagttaattggatcaatcccaaagttaagtggtttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | | ||| ||||| | ||| |||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
5196396 |
aggtgagatccctattgagatttccagcatatggcggcttcaaattttagatctttctcaaaacaagttaaatggatcaatcccacctttaagtggtttg |
5196495 |
T |
|
| Q |
101 |
acagttcttaggttcttgtatttgcaaaagaataatctctctggatcaataccatctgaactctctgaaggctcacaactacaacttctagatttgaggg |
200 |
Q |
| |
|
|| |||| |||||||||||||||||| ||||| ||||||||||||||| |||| |||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
5196496 |
actcttctaaggttcttgtatttgcaagagaatggtctctctggatcaatcccatatgaactctatgaaggcttccaactacaacttctagatttgaggg |
5196595 |
T |
|
| Q |
201 |
agaataaattttcaggtaaaattccccactggat |
234 |
Q |
| |
|
|||| ||||||||||| ||||||||| ||||||| |
|
|
| T |
5196596 |
agaacaaattttcaggaaaaattcccaactggat |
5196629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 5160748 - 5160986
Alignment:
| Q |
1 |
aggtgagatccctattgagatttccaacatgtcaagtcttaaaattctggatatttct-caaaacaagttaattggatcaatcccaaagttaagtggttt |
99 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||| |||| ||||| ||||| ||||||||||||| ||||||||||||| |||||| |||| |
|
|
| T |
5160748 |
aggtgagatccctattgagttttccaacatgttcagtcttgaaatgttggatctttcttcaaaacaagttaaatggatcaatcccacctttaagtagttt |
5160847 |
T |
|
| Q |
100 |
gacagttcttaggttcttgtatttgcaaaagaataatctctctggatcaataccatctgaactctctgaaggctcacaactacaacttctagatttgagg |
199 |
Q |
| |
|
||| ||| | |||||||||||||||||||||| ||||||||||||| |||||| |||||| |||||| ||||| ||||||||||||| ||||||||| |
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|
| T |
5160848 |
gacttctctaaagttcttgtatttgcaaaagaatgatctctctggatctataccaattgaactgtctgaaagctcaaaactacaacttctggatttgagg |
5160947 |
T |
|
| Q |
200 |
gagaataaattttcaggtaaaattccccactggattgat |
238 |
Q |
| |
|
||||| ||||||||||||||||||||| | ||||||||| |
|
|
| T |
5160948 |
gagaacaaattttcaggtaaaattcccaattggattgat |
5160986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 54 - 234
Target Start/End: Original strand, 7142948 - 7143128
Alignment:
| Q |
54 |
tttctcaaaacaagttaattggatcaatcccaaagttaagtggtttgacagttcttaggttcttgtatttgcaaaagaataatctctctggatcaatacc |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||| |||||| | ||| ||| |||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
7142948 |
tttctcaaaacaagttaattggatcaatcccagatttaagtagtttgaaaaatctaaggctcttgtatttgcaaaagaatgatctctctggatctatacc |
7143047 |
T |
|
| Q |
154 |
atctgaactctctgaaggctcacaactacaacttctagatttgagggagaataaattttcaggtaaaattccccactggat |
234 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||||||||| ||||||| |
|
|
| T |
7143048 |
atttgaactctctgaaggctcacaactacaacttttagatttgagggagaacaaactttcaagtaaaattcccaactggat |
7143128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 5173658 - 5173888
Alignment:
| Q |
1 |
aggtgagatccctattgagatttccaacatgtcaagtcttaaaattctggatatttctcaaaacaagttaattggatcaatcccaaagttaagtggtttg |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||| | ||| ||||| ||||||||||||||||||||||| ||||||||||||| | | | |
|
|
| T |
5173658 |
aggtcagatccctattgagatttccaacatgtccagtctttatattttggatctttctcaaaacaagttaattggagcaatcccaaagttcacagctgga |
5173757 |
T |
|
| Q |
101 |
acagttcttaggttcttgtatttgcaaaagaataatctctctggatcaataccatctgaactctctgaaggctcacaactacaacttctagatttgaggg |
200 |
Q |
| |
|
| ||| || ||||||||||| ||| ||||| |||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5173758 |
tc---tctgagattcttgtatttacaacagaatgatctctctggatttataccatttgaactctctgaaggctcaaaactacaacttctagatttgaggg |
5173854 |
T |
|
| Q |
201 |
agaataaattttcaggtaaaattccccactggat |
234 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||||| |
|
|
| T |
5173855 |
agaacaaactttcaggtaaaattcccaactggat |
5173888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 234
Target Start/End: Original strand, 5203420 - 5203524
Alignment:
| Q |
129 |
agaataatctctctggatcaataccatctgaactctctgaaggctcacaactacaacttctagatttgagggagaataaattttcaggtaaaattcccca |
228 |
Q |
| |
|
||||| ||||| ||||||| ||||||| |||||| |||| | | ||||| || ||||| |||| |||||| |||| |||||||||||||| |||||| | |
|
|
| T |
5203420 |
agaatgatctcgctggatctataccatttgaactgtctggaagttcacagctgaaacttttagacttgagg-agaacaaattttcaggtaacattcccaa |
5203518 |
T |
|
| Q |
229 |
ctggat |
234 |
Q |
| |
|
|||||| |
|
|
| T |
5203519 |
ctggat |
5203524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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