View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3278_low_1 (Length: 486)
Name: NF3278_low_1
Description: NF3278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3278_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 45 - 349
Target Start/End: Original strand, 360827 - 361119
Alignment:
| Q |
45 |
cacaaaagaatagttaacgataatatagaaataagctttaatgatgaagtatagccattgatgtatttctcaaaagactagccatcagtaattagaaaca |
144 |
Q |
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| T |
360827 |
cacaaaagaatagttaacgataatatagaaataagctttaatgatgaagtatagccattgatgtatttctcaaaagactagccatcaataattagaaaca |
360926 |
T |
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| Q |
145 |
gctttaataatatattcgtatgaacaaagtcatcattgaaaacccaatagcataaaaataaataggttgtactggacgcttaggcaagcaaggcatcatt |
244 |
Q |
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| T |
360927 |
gctttaataatatattcgtatgaacaaagtcatcattgaaaacccaatagcataaaaataaataggttgtactggacgcttaggcaagcaaggcatcatt |
361026 |
T |
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| Q |
245 |
gaggaaaacaaattataaagaacaggataaagaacaggatcggaaaagatacgcccatgatgctcggctattctgatgtaacaaaacaacaatatccatg |
344 |
Q |
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| T |
361027 |
gaggaaaataaatt------------ataaagaacagaatcggaaaagatacgcccatgatgctcggctattctgatgtaacaaaacaacaatatccatg |
361114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 436 - 476
Target Start/End: Original strand, 361113 - 361153
Alignment:
| Q |
436 |
tggcgactttgacaaagataaattaacgccataaacctatg |
476 |
Q |
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| T |
361113 |
tggcgactttgacaaagataaattaacgccataaacctatg |
361153 |
T |
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